A Cloud Native Batch System (Project under CNCF)

Genome annotation with AUGUSTUS

Visualize and annotate genomic coverage with ggplot2

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

MyGene.info: A BioThings API for gene annotations

Gene fusion detection and visualization

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

An elegant package to visualize gene structures

API for linked biological knowledge

A minimal desktop app for easy and convenient gene annotation and lookup.

Generic human DNA variant annotation pipeline

🧬 Gene analysis toolkit based on R

A python package and a set of shell commands to handle GTF files

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

A standalone interactive application for detecting biological significance on a set of genes

Annotate DNA sequences for Gene Ontology terms

📊 Identify cell types and pathways affected by genetic risk loci.