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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 363 81

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 287 110

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 130 4

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 5

  5. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 33 4

  6. Tiberius Tiberius Public

    deep learning gene finder

    Python 33 1

Repositories

Showing 10 of 19 repositories
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 363 81 140 (3 issues need help) 1 Updated Nov 14, 2024
  • learnMSA Public

    Learning and Aligning Large Protein Families (MSA-HMM)

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 18 MIT 2 5 0 Updated Nov 14, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 47 6 11 0 Updated Nov 13, 2024
  • Tiberius Public

    deep learning gene finder

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 33 MIT 1 6 0 Updated Nov 11, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 11 2 4 (1 issue needs help) 0 Updated Nov 5, 2024
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 287 110 155 5 Updated Oct 22, 2024
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 130 4 9 1 Updated Oct 16, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 33 GPL-3.0 4 0 0 Updated Oct 2, 2024
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
  • tf_tcmc Public Forked from liemonade/tf_tcmc

    Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

    Gaius-Augustus/tf_tcmc’s past year of commit activity
    Python 2 1 1 0 Updated Aug 16, 2024
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