This repository attains to the manuscript "Annotation of protein-coding genes in 49 diatom genomes (Bacillariophyta clade)" by Natalia Nenasheva, Clara Pitzschel, Cynthia Webster, Alex Hart, Jill Wegrzyn, Mia M. Bengtsson, Katharina J. Hoff.
It contains scripts and config files that were used to convert the BRAKER output files to (hopefully) NCBI Genomes compliant, functionally decorated gff3 files that are available at Zenodo with doi 10.5281/zenodo.13745090.
Contacts: [email protected], [email protected]
File processing steps (starting with braker.gtf/braker.aa) are documented in: