Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.

A vision-language foundation model for computational pathology - Nature Medicine

A FHIR® Server with internal, fast CQL Evaluation Engine

The most boring open source you've ever seen ....

Red Cross: Community-Based Surveillance

This repository contains all the code that I have used in my HL7 articles on my blog (both Java and .NET examples are included)

An open source multi tenant cloud platform for small scale clinics

SATUSEHAT Integration Library

Mining Minds is a collection of services, tools and techniques working collaboratively to investigate on human’s daily routines to provide a personalized well-being and health-care support

A minimal meditation app made with Flutter

Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.

official code of "Eliminating Indefiniteness of Clinical Spectrum for Better Screening COVID-19", accepted by IEEE Journal of Biomedical and Health Informatics (JBHI2021).

HL7 FHIR Based Secure Data Repository

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!

Easier CUSUM control charts. Returns simple CUSUM statistics, CUSUMs with control limit calculations, and function to generate faceted CUSUM Control Charts

Discovering the positive and negative effects of every food and drug in the world!

FHIR Server

Python CCDA parsing engine

Source code and models for the paper "Cyberbullying Detection with Fairness Constraints". IEEE Internet Computing, 2020