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brain-segmentation

Here are 27 public repositories matching this topic...

quqixun / BrainPrep

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

mri registration preprocessing enhancement brain fsl ants skull-stripping brain-segmentation bias-field-correction

Updated May 15, 2018
Python

ENHANCE-PET / MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

3d-segmentation brain-segmentation pet-ct ct-segmentation nnunet organ-segmentation tb-pet bone-segmentation muscle-segmentation fat-segmentation psoas-segmentation total-body-segmentation

Updated Nov 7, 2024
Python

DeepBrainSeg

koriavinash1 / DeepBrainSeg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

deep-learning artificial-intelligence ensemble-learning segmentation brats medical-image-analysis deep-convolutional-neural-networks brain-segmentation brain-tumor brain-tumor-segmentation biomedical-image-analysis

Updated Aug 1, 2023
Python

josedolz / LiviaNET

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

deep-neural-networks theano deep-learning cnn mri medical-imaging neural-networks deep-learning-algorithms neuroimaging convolutional-networks convolutional-neural-networks image-segmentation neuroimage medical-image-processing 3d-convolutional-network 3d-cnn medical-image-analysis medical-image-segmentation brain-segmentation

Updated Nov 20, 2019
Python

josedolz / HyperDenseNet

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

deep-neural-networks theano deep-learning cnn neural-networks deep-learning-algorithms segmentation densenet fcn convolutional-neural-networks image-segmentation medical-image-processing 3d-convolutional-network 3d-cnn medical-image-analysis medical-image-segmentation brain-segmentation hyperdensenet multi-modal-imaging segment-medical-images

Updated Nov 20, 2019
Python

MaciejMazurowski / brain-segmentation

Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net

python deep-learning matlab keras dsc mri-images unet brain-mri trained-weights skull-stripping brain-segmentation

Updated Nov 21, 2019
Python

NYUMedML / DARTS

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

deep-learning pytorch artificial-intelligence medical-imaging unet brain-mri freesurfer brain-segmentation

Updated Nov 1, 2023
Jupyter Notebook

ai-med / QuickNATv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

deep-learning neuroscience neuroanatomy-toolbox brain-segmentation

Updated Apr 9, 2019
MATLAB

volBrain / AssemblyNet

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

docker deep-learning neuroscience mri medical-imaging neuroimaging autism nifti brain-imaging neuroanatomy dementia schizophrenia parkinson brain-segmentation alzheimer neurodegenerative-diseases mri-segmentation

Updated Jun 28, 2023

nipype-preprocess-on-brain-MR

NatLee / nipype-preprocess-on-brain-MR

The project is used to do preprocessing on brain MR images by using Nipype.

python dockerfile pipeline mri registration segmentation enhancement brain fsl brain-imaging mr brain-mri medical-image-processing nipype ants acpc skull-stripping brain-segmentation bias-field-correction

Updated Jun 18, 2024
Python

Macatools / macapype

PNH segmentation pipelines based on nipype

python mri mesh fsl nipype brain-extraction ants afni brain-segmentation spm12 mri-segmentation primate mri-analysis

Updated Nov 12, 2024
Python

shivangi-aneja / Multi-Modal-Brain-Segmentation

3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning

cnn semi-supervised-learning segmentation 3d-gan adversarial-learning brain-segmentation 3d-unet

Updated Dec 16, 2019
Python

peirong26 / Brain-ID

[ECCV 2024] Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging

mri data-simulation representation-learning brain super-resolution ct image-synthesis brain-segmentation foundation-models task-agnostic eccv2024

Updated Jul 22, 2024
Python

AICONSlab / iCVMapp3r

AICONSlab's brain extraction (skull-stripping) algorithm using CNNs

deep-learning image-processing neuroscience cnn python3 mri medical-imaging neuroimaging brain-segmentation

Updated Oct 8, 2024
Python

AICONSlab / VentMapp3r

AICONSlab's ventricular segmentation technique using CNNs

deep-learning cnn python3 mri medical-imaging brain-segmentation ventricle

Updated Oct 29, 2024
Python

leslie-zi-pan / WMH_Segmentation_ipynb

Brain white matter hyperintensity segmentation, with T1 and FLAIR MRI images, using UNet.

deep-learning pytorch unet dementia-diagnosis dementia brain-segmentation unet-pytorch white-matter-segmentation white-matter-hyperintensities monai

Updated Apr 24, 2021
Jupyter Notebook

vladzalevskyi / brain-segmentation

This repository contrains source code and the report for the Brain Segmentation challenge. It was the final assignment for the Medical Image Segmentation and Analysis course at the University of Girona for the MAIA programme.

python deep-learning pytorch maia u-net brain-segmentation pytorch-lightning

Updated Jan 10, 2023
Jupyter Notebook

CRazorback / OHSR

[MICCAI'23] "Learning Ontology-Based Hierarchical Structural Relationship for Whole Brain Segmentation".

metric-learning brain-segmentation

Updated Oct 11, 2023
Python

asyrofist / brain-segmen

This project shows a simple way to segment a brain MRI image

machine-learning cluster morphology brain-segmentation

Updated Oct 16, 2021
Jupyter Notebook

CSIM-Toolkits / Slicer-LesionSpotlightExtension

3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions

segmentation brain magnetic-resonance-imaging 3d-slicer-extension brain-segmentation lesion-segmentation t1-weighted-mri t2-flair-mri

Updated Nov 9, 2024
Python

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