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Zero- and one-shot mapping#177

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alextopalova wants to merge 44 commits intomastertheislab/scarches:masterfrom alextheislab/scarches:alexCopy head branch name to clipboard

+6,516

Commits

Commits on Oct 24, 2022

• Adding a warning

  alextopalova

  committed
  be94c3f

• Zero-shot and one-shot methods

  alextopalova

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  e646a80

Commits on Oct 25, 2022

• New notebooks

  alextopalova

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  a963193

Commits on Oct 26, 2022

• Slight changes notebooks

  alextopalova

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  013bb4c

Commits on Oct 27, 2022

• Changes in notebooks and trvae

  alextopalova

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  833368c

• Changes notebook and trvae

  alextopalova

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  a3732ef

Commits on Oct 28, 2022

• One-shot notebook changes

  alextopalova

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  c2412f9

• Zero-shot notebook

  alextopalova

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  6f48cf5

Commits on Nov 2, 2022

• Notebooks updates

  alextopalova

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  c583533

Commits on Nov 4, 2022

• Notebooks + comparison

  alextopalova

  committed
  24dd718

Commits on Nov 8, 2022

• Comparison batch and epoch change

  alextopalova

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  2b8c0a3

Commits on Nov 10, 2022

• Median values added, sampling removed

  alextopalova

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  132cecd

• Addition notebook

  alextopalova

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  7c815f0

• Updated embed

  alextopalova

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  d3b5d69

Commits on Nov 30, 2022

• Subsampling one and zero-shot

  alextopalova

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  ef27d3a

Commits on Dec 1, 2022

• Slight changes comparison

  alextopalova

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  0185005

• Renaming folder

  alextopalova

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  a22a423

Commits on Dec 8, 2022

• Models pushed

  

  ICB Aleksandra Topalova

  committed
  6abcd56

• Changes notebook

  

  ICB Aleksandra Topalova

  committed
  5df9c69

Commits on Dec 12, 2022

• Delete notebooks/reference_model directory

  alextopalova

  authored
  30ce428

• Delete notebooks/surgery_model directory

  alextopalova

  authored
  477fa53

• Slight modification comparison

  alextopalova

  committed
  db21318

• Slight modifications comparison

  alextopalova

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  49545c6

• Readable notebook

  alextopalova

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  5930e06

• Reran notebook

  

  ICB Aleksandra Topalova

  committed
  be596be

Commits on Dec 13, 2022

• Switched one and zero-shot places

  

  ICB Aleksandra Topalova

  committed
  dd09524

Commits on Jan 20, 2023

• Updated

  

  ICB Aleksandra Topalova

  committed
  812ffc1

Commits on Jan 25, 2023

• Update - val_loss

  alextopalova

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  d2df15d

Commits on Jan 27, 2023

• Update

  

  ICB Aleksandra Topalova

  committed
  2740bc4

• Delete one_shot.ipynb

  alextopalova

  authored
  82f1915

• Delete zero_shot.ipynb

  alextopalova

  authored
  1ad5886

• Update

  

  ICB Aleksandra Topalova

  committed
  079d7a5

• Merge branch 'alex' of https://github.com/theislab/scarches into alex

  

  ICB Aleksandra Topalova

  committed
  9e3a06e

• Update

  

  ICB Aleksandra Topalova

  committed
  da284b6

Commits on Feb 1, 2023

• Remove Villani

  alextopalova

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  aae5ad5

• New queries

  alextopalova

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  f4e8fe4

Commits on Feb 7, 2023

• Updates

  

  ICB Aleksandra Topalova

  committed
  3c20102

Commits on Feb 9, 2023

• Retrained Oetjen, Kang, 10x

  

  ICB Aleksandra Topalova

  committed
  73290a5

Commits on Feb 16, 2023

• Final changes

  alextopalova

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  61fd0ce

Commits on Mar 9, 2023

• New benchmarking, 5 reruns

  alextopalova

  committed
  719de82

Commits on Mar 13, 2023

• Updates Oetjen notebook

  

  ICB Aleksandra Topalova

  committed
  cc764a3

Commits on Mar 17, 2023

• 5 reruns + avg

  alextopalova

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  b000e61

• 5 reruns

  alextopalova

  committed
  9d1f6a5

Commits on Aug 9, 2023

• Fix corrupted Oetjen and Sun notebook

  alextopalova

  committed
  2e9192f