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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 936 220

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 450 107

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 389 50

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 374 60

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 363 69

6. single-cell-transformer-papers single-cell-transformer-papers Public

   HTML 321 41