Repositories list

• reactome_chatbot

  Public
  This is Reactomes chatbot to its database and search index

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

• pwp-diagram

  Public
  GWT widget to visualise Reactome pathways

  Java

  •7•5•0•1•Updated Nov 12, 2024Nov 12, 2024

• search-indexer

  Public
  Java

  •3•0•0•1•Updated Nov 11, 2024Nov 11, 2024

• release_gocam

  Public
  This pipeline generates go-cam ttl files from biopax and validates them

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• ReactomeGSA

  Public
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

  R

  •

  Other

  •4•22•21•1•Updated Nov 7, 2024Nov 7, 2024

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•0•Updated Nov 6, 2024Nov 6, 2024

• search-core

  Public
  Java

  •2•1•0•0•Updated Nov 6, 2024Nov 6, 2024

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •7•18•1•0•Updated Nov 6, 2024Nov 6, 2024

• report-logger

  Public
  Centralises different events across various services for periodic report

  Java

  •0•1•0•0•Updated Nov 6, 2024Nov 6, 2024

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •5•10•1•1•Updated Nov 6, 2024Nov 6, 2024

• popularpathways

  Public
  Java

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• analysis-service

  Public
  A RESTful API to access pathway analysis tools

  Java

  •3•4•1•1•Updated Nov 6, 2024Nov 6, 2024

• gsa-backend

  Public
  Backend code of the Kubernetes based ReactomeGSA Analysis System

  Python

  •1•4•16•2•Updated Nov 6, 2024Nov 6, 2024

• statistics-generator

  Public
  Cypher queries to generate automatically release statistics

  R

  •

  MIT License

  •0•1•2•0•Updated Nov 5, 2024Nov 5, 2024

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •1•0•5•0•Updated Nov 5, 2024Nov 5, 2024

• container

  Public
  🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

  dockerinfrastructuredocker-compose

  Perl

  •4•9•5•0•Updated Nov 5, 2024Nov 5, 2024

• release-qa-pipeline

  Public
  Consolidates all Reactome release QA checks.

  Shell

  •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

• pwp-browser

  Public
  A tool for visualising and interacting with pathways data

  Java

  •7•10•0•0•Updated Nov 5, 2024Nov 5, 2024

• interactors-core

  Public
  Java

  •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• diagram-converter

  Public
  Generates a set of JSON files to be consumed by the Diagram Viewer

  Java

  •3•1•0•0•Updated Nov 5, 2024Nov 5, 2024

• data-content

  Public
  Java

  •2•1•0•0•Updated Nov 5, 2024Nov 5, 2024

• graph-importer

  Public
  Converts the Reactome knowledgebase into a interconnected graph

  Java

  •4•7•0•0•Updated Nov 5, 2024Nov 5, 2024

• diagram-exporter

  Public
  Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)

  Java

  •3•1•2•2•Updated Nov 5, 2024Nov 5, 2024

• fireworks-exporter

  Public
  Exports the pathways overview as raster images

  Java

  •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Oct 30, 2024Oct 30, 2024

• gsa-frontend

  Public
  TypeScript

  •

  Apache License 2.0

  •1•1•4•1•Updated Oct 22, 2024Oct 22, 2024

• ngx-reactome-base

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• release-biomodels

  Public
  Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances

  releasedata-release-pipelinemysql-release

  Java

  •1•0•2•0•Updated Oct 10, 2024Oct 10, 2024