Repositories list

• release-common-lib

  Public
  Data-release-pipeline: Common code for Reactome data-release-pipeline steps

  releasedata-release-pipelinemysql-release

  Java

  •0•0•3•3•Updated Feb 28, 2025Feb 28, 2025

• reactome_chatbot

  Public
  This is Reactomes chatbot to its database and search index

  Python

  •

  Apache License 2.0

  •0•1•0•1•Updated Feb 27, 2025Feb 27, 2025

• reactome_galaxy

  Public
  This is for running the analysis service

  Kotlin

  •

  Apache License 2.0

  •0•0•11•2•Updated Feb 27, 2025Feb 27, 2025

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •7•17•2•1•Updated Feb 27, 2025Feb 27, 2025

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• Website

  Public
  Contains the code and configuration for the website

  PHP

  •

  GNU General Public License v2.0

  •2•5•1•0•Updated Feb 27, 2025Feb 27, 2025

• reaction-exporter

  Public
  Java

  •2•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• diagram-exporter

  Public
  Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)

  Java

  •3•1•2•2•Updated Feb 26, 2025Feb 26, 2025

• interactors-core

  Public
  Java

  •2•0•0•1•Updated Feb 26, 2025Feb 26, 2025

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •5•9•1•1•Updated Feb 25, 2025Feb 25, 2025

• fireworks-layout

  Public
  Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

  visualisationradial-layoutpathways+ 2pathways-overviewreactome-pathway

  Java

  •3•1•1•0•Updated Feb 25, 2025Feb 25, 2025

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Feb 23, 2025Feb 23, 2025

• fireworks-exporter

  Public
  Exports the pathways overview as raster images

  Java

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Feb 23, 2025Feb 23, 2025

• release-update-dois

  Public
  Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

  releasedata-release-pipelinemysql-release

  Java

  •0•1•0•0•Updated Feb 21, 2025Feb 21, 2025

• release-update-stable-ids

  Public
  Data-release-pipeline: Updates stable identifiers of manually curated instances

  releasedata-release-pipelinemysql-release

  Java

  •0•0•1•1•Updated Feb 20, 2025Feb 20, 2025

• release-ortho-stable-id-history

  Public
  Java

  •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

• logic-network-generator

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 19, 2025Feb 19, 2025

• search-indexer

  Public
  Java

  •3•0•0•1•Updated Feb 16, 2025Feb 16, 2025

• data-content

  Public
  Java

  •2•1•0•0•Updated Feb 14, 2025Feb 14, 2025

• analysis-service

  Public
  A RESTful API to access pathway analysis tools

  Java

  •3•4•1•1•Updated Feb 14, 2025Feb 14, 2025

• release-qa

  Public
  A collection of tools to perform QA checks during the Release process.

  Java

  •1•2•4•8•Updated Feb 12, 2025Feb 12, 2025

• pwp-browser

  Public
  A tool for visualising and interacting with pathways data

  Java

  •7•10•0•0•Updated Feb 11, 2025Feb 11, 2025

• pwp-model

  Public
  Data model shared accross the widgets and browser

  Java

  •

  Apache License 2.0

  •4•1•0•0•Updated Feb 11, 2025Feb 11, 2025

• diagram-reader

  Public
  Java

  •1•0•0•1•Updated Feb 11, 2025Feb 11, 2025

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Feb 11, 2025Feb 11, 2025

• search-core

  Public
  Java

  •2•1•0•0•Updated Feb 9, 2025Feb 9, 2025

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •

  Apache License 2.0

  •1•0•5•0•Updated Feb 9, 2025Feb 9, 2025

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•2•Updated Feb 9, 2025Feb 9, 2025

• graph-add-links

  Public
  Java

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• pwp-fireworks-js

  Public
  Java

  •2•0•1•1•Updated Feb 5, 2025Feb 5, 2025