Repositories list

• decombinator

  Public
  Decombinator v5: fast, error-correcting analysis of TCR repertoires

  bioinformaticssequencingimmunology

  bioinformaticssequencingimmunology

  Python

  •

  MIT License

  •8•27•7•0•Updated Mar 5, 2026Mar 5, 2026

• Decombinator-Tools

  Public
  Useful scripts for working with Decombinator

  Python

  •0•1•0•0•Updated Aug 6, 2025Aug 6, 2025

• TCR-Cancer-Prediction_Jan_Pytel

  Public
  TCR_Cancer_prediction follow up to Rudy by Jan Pytel

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Apr 24, 2025Apr 24, 2025

• sceptr

  Public
  Simple Contrastive Embedding of the Primary sequence of T cell Receptors

  Python

  •

  MIT License

  •3•0•0•0•Updated Mar 13, 2025Mar 13, 2025

• TCR-Cancer-Prediction

  Public
  Rudy Yuen's MSc project 2024

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• Decombinator-Test-Data

  Public
  Sample TCR FASTQ data for testing the Decombinator pipeline

  Shell

  •2•0•1•0•Updated Mar 25, 2024Mar 25, 2024

• CovidsortiumTCRExpanded

  Public
  Scripts that produce data and figures for the COVIDsortium TCR paper (Aug 2022)

  R

  •0•1•0•0•Updated Aug 4, 2023Aug 4, 2023

• Bulk-RNAseq-analysis

  Public
  Repo with scripts used for bulk RNAseq analysis in the Noursadeghi's lab

  R

  •0•0•0•0•Updated Dec 22, 2022Dec 22, 2022

• ExpandedBenchmark

  Public
  1•6•0•0•Updated Jul 1, 2021Jul 1, 2021

• Modeller-Repair

  Public
  Python

  •0•0•0•0•Updated Jun 29, 2021Jun 29, 2021

• Single-Tag-Decombinator

  Public
  Modified Version of Decombinator to Allow Single Tag Search for Short Read Data

  Python

  •1•1•0•0•Updated Jul 27, 2020Jul 27, 2020

• Decombinator-Tags-FASTAs

  Public
  The tag, FASTA and translate files which Decombinator v3 uses in its analysis of TCR repertoire data

  1•0•0•0•Updated Apr 8, 2020Apr 8, 2020

• Exclusive-Group-Lasso

  Public
  Solve exclusive group Lasso

  Python

  •3•0•0•0•Updated Nov 7, 2019Nov 7, 2019

• LeoTask

  Public
  A lightweight parallel task running and results aggregation (MapReduce) framework

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•1•0•1•Updated Jun 10, 2018Jun 10, 2018

• Single-cell-imaging

  Public
  0•0•0•0•Updated Mar 22, 2018Mar 22, 2018

• tcRIP

  Public
  UCL Machine Learning MSc Thesis Code: TCR Classification to CD4 or CD8

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 3, 2017Sep 3, 2017

• KT2-TCR-sequences

  Public
  FASTA file sequences of the KT2 T cell receptors

  1•0•0•0•Updated May 23, 2017May 23, 2017

• automate-decombinator

  Public
  Scripts for automating the Decombinator analysis pipeline

  Makefile

  •1•0•0•0•Updated Aug 12, 2016Aug 12, 2016

• Decombinator_v2

  Public
  Fast, efficient tool for analysis of T cell receptor repertoires

  Python

  •9•1•0•0•Updated Sep 9, 2015Sep 9, 2015

• Dynamic-Programming-LPBoost

  Public
  Dynamic Programming LPBoost over String Kernel for TCR Classification

  MATLAB

  •2•0•0•0•Updated Aug 1, 2015Aug 1, 2015

• Dynamic-LPBoost-for-TCR-Classification

  Public
  MATLAB

  •1•0•0•0•Updated May 22, 2015May 22, 2015

• LeoTaskApp

  Public
  Applications based on the LeoTask framework http://github.com/mleoking/LeoTask.

  Java

  •

  BSD 2-Clause "Simplified" License

  •2•1•0•0•Updated Apr 30, 2015Apr 30, 2015

• agilp

  Public
  Bioconductor package for anlaysing array data

  R

  •0•0•0•0•Updated Jan 5, 2015Jan 5, 2015

• tcr-analysis

  Public
  Scripts and files that I use to analyse T cell receptor repertoire data, produced by deep-sequencing

  Python

  •8•0•0•0•Updated Oct 31, 2014Oct 31, 2014