GitHub - innate2adaptive/Decombinator_v2: Fast, efficient tool for analysis of T cell receptor repertoires

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
.gitattributes		.gitattributes
.gitignore		.gitignore
20141209_build_cdr3_files.py		20141209_build_cdr3_files.py
AddAll2Hexr.py		AddAll2Hexr.py
CDR3extractoR.R		CDR3extractoR.R
DecombinatorFunctionsV2_2.py		DecombinatorFunctionsV2_2.py
DecombinatorV2Manual.pdf		DecombinatorV2Manual.pdf
DecombinatorV2Manual.tex		DecombinatorV2Manual.tex
DecombinatorV2_2.py		DecombinatorV2_2.py
DemultiplexoR.R		DemultiplexoR.R
PackagoR.R		PackagoR.R
Pipeline for TCR analysis.docx		Pipeline for TCR analysis.docx
Plotting.py		Plotting.py
SP1_indeces.txt		SP1_indeces.txt
SP2_indeces.txt		SP2_indeces.txt
ShortReadDecombinator.py		ShortReadDecombinator.py
V&J_region_names.xls		V&J_region_names.xls
collapsinatoR.R		collapsinatoR.R
collapsinatoR_6NSP2.R		collapsinatoR_6NSP2.R
decombinate.bat		decombinate.bat
decombinatem.bat		decombinatem.bat
hTRAV_D.csv		hTRAV_D.csv
human_TRAJ_region.fasta		human_TRAJ_region.fasta
human_TRAV_region.fasta		human_TRAV_region.fasta
human_TRBD_region.fasta		human_TRBD_region.fasta
human_TRBJ_region.fasta		human_TRBJ_region.fasta
human_TRBV_region.fasta		human_TRBV_region.fasta
human_TRDJ_region.fasta		human_TRDJ_region.fasta
human_TRDV_region.fasta		human_TRDV_region.fasta
human_TRGJ_region.fasta		human_TRGJ_region.fasta
human_TRGV_region.fasta		human_TRGV_region.fasta
humantags_traj.txt		humantags_traj.txt
humantags_trav.txt		humantags_trav.txt
humantags_trbj.txt		humantags_trbj.txt
humantags_trbv.txt		humantags_trbv.txt
humantags_trdj.txt		humantags_trdj.txt
humantags_trdv.txt		humantags_trdv.txt
humantags_trgj.txt		humantags_trgj.txt
humantags_trgv.txt		humantags_trgv.txt
length_fastq.R		length_fastq.R
mouse_TRAJ_region.fasta		mouse_TRAJ_region.fasta
mouse_TRAV_region.fasta		mouse_TRAV_region.fasta
mouse_TRBJ_region.fasta		mouse_TRBJ_region.fasta
mouse_TRBV_region.fasta		mouse_TRBV_region.fasta
mouse_TRDJ_region.fasta		mouse_TRDJ_region.fasta
mouse_TRDV_region.fasta		mouse_TRDV_region.fasta
mouse_TRGJ_region.fasta		mouse_TRGJ_region.fasta
mouse_TRGV_region.fasta		mouse_TRGV_region.fasta
mousetags_traj.txt		mousetags_traj.txt
mousetags_trav.txt		mousetags_trav.txt
mousetags_trbj.txt		mousetags_trbj.txt
mousetags_trbv.txt		mousetags_trbv.txt
mousetags_trdj.txt		mousetags_trdj.txt
mousetags_trdv.txt		mousetags_trdv.txt
mousetags_trgj.txt		mousetags_trgj.txt
mousetags_trgv.txt		mousetags_trgv.txt
testseqs.fastq		testseqs.fastq