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    44 repositories

    • codeocean-mcp-server

      Public
      Code Ocean MCP Server
      Python
      •
      MIT License
      •1•3•0•0•Updated Dec 23, 2025Dec 23, 2025

    • scrna-visualization-template

      Public
      Python
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • fip-analysis-template

      Public template
      Jupyter Notebook
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • go-mlflow

      Public
      Golang MLflow SDK
      Go
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • r-seurat-demo

      Public template
      0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

    • infra-aws-vpc-system-requirements

      Public
      Python
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • single-cell-tutorial

      Public template
      Jupyter Notebook
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • codeocean-sdk-python

      Public
      Code Ocean Python SDK
      Python
      •
      MIT License
      •4•9•1•0•Updated Oct 21, 2025Oct 21, 2025

    • amazon-ebs-autoscale

      Public
      Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
      Shell
      •
      MIT License
      •60•0•0•0•Updated Sep 14, 2025Sep 14, 2025

    • strands-agent-with-codeocean-mcp-server-and-streamlit-demo

      Public
      A simple demo showing how to use code ocean mcp server with local agents and a simple streamlit chat interface
      Python
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • co-support

      Public
      Code Ocean Support Command-Line
      Python
      •0•1•0•0•Updated May 21, 2025May 21, 2025

    • seurat-demo

      Public template
      HTML
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • pipeline-training-prep

      Public
      Python
      •0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

    • AIBS_training

      Public
      HTML
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • aibs-patch-seq

      Public template
      Jupyter Notebook
      •0•1•0•0•Updated Jun 25, 2024Jun 25, 2024

    • aibs_thalamus_merfish

      Public template
      Jupyter Notebook
      •2•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • co-apps-mutect-preprocess

      Public
      Shell
      •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • co-apps-gatk-mutect2-tumor-only

      Public
      Shell
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • co-apps-gatk-mutect2

      Public
      Shell
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • co_aux_tools

      Public
      Convenince tools for working in Code Ocean capsules and pipelines.
      Python
      •
      MIT License
      •0•3•0•0•Updated Nov 9, 2023Nov 9, 2023

    • co-apps-combfold-prepare-fasta

      Public
      This capsule outputs fasta files which can be input for AlphaFold Multimer or ColabFold.
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • co-apps-combfold-combinatorial-assembly

      Public
      The CombFold Combinatorial Assembly algorithm assembles paired subunit structures into a single large complex.
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • text-notification

      Public
      Add text notifications to your Code Ocean workflows.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • casule_databricks_data_asset_generation

      Public
      Python
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • capsule_databricks_data_connector

      Public
      This tool is designed to create a connection between Code Ocean and your SQL Warehouse in Databricks.
      Python
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • capsule_mysql_r_odbc

      Public
      Capsule to connect to MySQL from RStudio
      R
      •0•0•0•0•Updated Jul 13, 2023Jul 13, 2023

    • capsule_databricks_r_odbc

      Public
      Databricks connector to RStudio
      R
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • coding_workshop

      Public
      Shell
      •0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

    • branding

      Public
      Code Ocean branding images
      0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • private-cloud

      Public archive
      Code Ocean Private Cloud Deployment
      TypeScript
      •0•2•0•5•Updated Aug 12, 2021Aug 12, 2021