Code Ocean training for AIBS

Day 1 - Capsule training
April 9, 2024
9am-12pm PST

Day 2 - Advanced training
April 10, 2024
1pm-4pm PST

Location: On-site in rooms CR_670 A and B

Code Ocean

Code Ocean's mission is to make computational research a connected community that together drives for faster, more collaborative, higher quality discoveries.

Schedule

Day 1: Code Ocean fundamentals (all users)

Learning Objectives

• Create a new analysis in Code Ocean or import from GitHub
• Share code, data, and results with colleagues
• Develop code or create No-Code Apps

Times	Day 1
9:00-9:15	Kickoff: a new way to do computational research
9:15-9:20	Create a reproducible analysis in the Cloud in 5 minutes
9:20-10:30	Preprocessing and exploratory analysis of thalamus MERFISH data
10:30-10:45	Break
10:45-11:30	Collaboration & data management
11:30-12:00	Internal cloud policy overview

Day 2: Scaling and Automation (power-users)

Learning Objectives

• Run complex workflows in parallel
• Automate running analyses with different datasets
• Learn about new Code Ocean features

Times	Day 2
12:30 - 1:00	Open Q&A
1:00 - 2:30	Code Ocean Pipelines: large scale parallel processing
2:30 - 2:45	Break
2:45 - 3:15	Automating workflows with the Code Ocean API
3:15 - 3:45	Sneak Peek: upcoming features in Code Ocean
3:45 - 4:00	Wrapping Up & Next Steps

On Site Facilitators

• Jake Valsamis
• Iain Buchanan

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