pycistopic skipped

src/methods/multi_omics/pycistopic/config.vsh.yaml → src/methods/multi_omics/pycistopic/config.novsh.yaml

@@ -10,19 +10,6 @@ functionality:
       Cis-regulatory topic modeling using pycisTopic.
     documentation_url: https://pycistopic.readthedocs.io/en/latest/
   arguments:
-    - name: --multiomics_atac
-      type: file
-      must_exist: true
-      example: resources/grn-benchmark/multiomics_atac.h5ad
-      info:
-        label: multiomics_atac
-        summary: "ATAC data"
-        file_type: h5ad
-        columns: 
-          - name: dummpy
-            type: string
-            required: false
-      required: true
     - name: --qc
       type: boolean_true
       description: Whether to perform quality control
@@ -47,10 +34,7 @@ functionality:
       type: file
       direction: output
       default: 'output/pycistopic/cistopic_object_with_model.pkl'
-    - name: --region_sets
-      type: file
-      direction: output
-      default: 'output/pycistopic/region_sets/'
+
   resources:
     - type: python_script
       path: script.py