Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NativePlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NativePlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Fetching repo for https://github.com/openproblems-bio/openproblems.git Fetching repo for https://github.com/openproblems-bio/openproblems.git Config "grn_inference_scenicplus": Could not find dependency 'grn_methods/scenicplus' Config "grn_inference_scenicplus": Could not find dependency 'grn_methods/scenicplus' Not all configs built successfully 2/34 dependency resolutions failed 32/34 configs built successfully