Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NativePlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NativePlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: DockerPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: NextflowPlatform is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Warning: Functionality is deprecated: Functionality level is deprecated, all functionality fields are now located on the top level of the config file. Deprecated since 0.9.0, planned removal 0.10.0. Warning: .platforms is deprecated: Use 'engines' and 'runners' instead. Deprecated since 0.9.0, planned removal 0.10.0. Reading file 'src/methods/multi_omics/scenicplus/config.vsh.yaml' failed Reading file 'src/methods/multi_omics/scglue/config.vsh.yaml' failed Reading file 'src/metrics/all_metrics/config.vsh.yaml' failed Config "grn_inference_scenicplus": Could not find dependency 'grn_methods/scenicplus' Config "grn_inference_scenicplus": Could not find dependency 'grn_methods/scenicplus' Not all configs built successfully 3/45 configs encountered parse errors 2/45 dependency resolutions failed 40/45 configs built successfully