Refactor totalvi #1092
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Refactor totalvi #1092
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…io/openpipeline into refactor-totalvi
* Implement from_tiledb_to_h5mu component. * Use dim_names * Update CHANGELOG * Update src/convert/from_tiledb_to_h5mu/config.vsh.yaml Co-authored-by: Dorien <[email protected]> --------- Co-authored-by: Dorien <[email protected]>
Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 6 to 7. - [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases) - [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md) - [Commits](stefanzweifel/git-auto-commit-action@v6...v7) --- updated-dependencies: - dependency-name: stefanzweifel/git-auto-commit-action dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…1086) * filter_with_counts: avoid segfault from malformatted sparse matrices by raising an error * Update CHANGELOG * Fix test dependencies
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Changelog
Existing totalvi component and workflow combine totalvi integration by mapping to reference dataset using scarches.
integrate/totalvi->integrate/totalvi_scarchesworkflows/integration/totalvi_leiden->workflows/integration/totalvi_scarches_leidenintegrate/totalviandworkflows/integration/totalvi_leiden), that integrate datasets with totalvi without scarches reference mappingIssue ticket number and link
Closes #546
Checklist before requesting a review
I have performed a self-review of my code
Conforms to the Contributor's guide
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
CI tests succeed!