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Update scanpy and related components #1074

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Changelog

... Describe your changes ...

Issue ticket number and link

Closes #xxxx (Replace xxxx with the GitHub issue number)

Checklist before requesting a review

  • I have performed a self-review of my code

  • Conforms to the Contributor's guide

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Documentation
    • Bug fixes

  • Proposed changes are described in the CHANGELOG.md

  • CI tests succeed!

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@DriesSchaumont