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TableInfo: ptm_subtype.tsv
Mano Maurya edited this page May 29, 2025
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2 revisions
The ptm_subtype.tsv
table will have as many rows as the number of unique ptm_subtype terms appearing in the ptm_subtype
column of ptm.tsv. This table can be empty (header-row only).
Field | Field Description | Required? | Field Value Type | Extra Info |
---|---|---|---|---|
id | A valid ptm_subtype ID from Gene Ontology | Required | string | Example: GO:0006493
|
name | A short, human-readable, machine-readable label for this Gene Ontology term | Required | string | protein O-linked glycosylation |
description | A human-readable description of this Gene Ontology term | Optional | string | Please note that ptm_type and ptm_subtype are related in a hierarchy. For example, if ptm_type is GO:0006486 , then ptm_subtype will be one of the subentries of GO:0006486 but not the regulation terms, e.g., GO:0006493. Similarly, if ptm_type is GO:0006468 , then ptm_subtype will be one of its subentries, such as GO:0007258. |
synonyms | A list of synonyms for this term as identified by the Gene Ontology metadata | Optional | JSON array of strings | Example: ["text1", "text2"]. Provide an empty JSON array [] if a value is null. |
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_ptm.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_ptm.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- domain_location.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- ptm.tsv
- ptm_type.tsv
- ptm_subtype.tsv
- sample_prep_method.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary