-
Notifications
You must be signed in to change notification settings - Fork 7
TableInfo: subject_role.tsv
Amanda Charbonneau edited this page Feb 27, 2021
·
1 revision
| id | name | description |
|---|---|---|
| cfde_subject_role:0 | single organism | The organism represented by a subject in the 'single organism' granularity category |
| cfde_subject_role:1 | host | Any organism identified as a host for a subject assigned to the 'symbiont system', 'host-pathogen system', or 'microbiome' granularity categories |
| cfde_subject_role:2 | symbiont | An organism identified as a symbiont within a subject assigned to the 'symbiont system' granularity category |
| cfde_subject_role:3 | pathogen | An organism identified as a pathogen symbiont in a subject assigned to the 'host-pathogen system' granularity category |
| cfde_subject_role:4 | microbiome taxon | A constituent taxon of either (a) a subject assigned to the 'environmental microbiome' granularity category or (b) the microbiome (non-host) portion of a subject assigned to the 'host-associated microbiome' granularity category [NB: This role is probably not appropriate for Level 1, because it necessitates the post-facto attachment of downstream analysis procedures (subject -> sample -> library prep -> sequencing -> bioinformatics -> taxonomic classification results) to a subject which was originally uncharacterized at this level] |
| cfde_subject_role:5 | cell line ancestor | A taxon identified as a source organism for a subject assigned to the 'cell line' granularity category |
| cfde_subject_role:6 | synthetic | A synthetic biological entity |
-
Tutorials
-
C2M2 Table Guide
-
Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv - disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- sample_prep_method.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
-
Table Summary