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The new file deposit functionality has been developed primarily with CUFTS in mind. In order to ingest cufts::
Download the latest complete package from http://cufts2.lib.sfu.ca/knowledgebase/
Extract the tgz file
For each file you wish to upload, script a curl command as follows (Or something similar of your choosing)
curl -X PUT -F content=@doaj "http://localhost:8080/gokb/packages?a=b&b=c"