Quick document links

CTTV pipeline projects and target-disease associations (TD-associations)

CTTV TD-associations FAQs

CTTV URIs and namespaces

Changes in JSON schema from 1.0 to 1.1

Schema 1.1 overview

Folder content

1. help - Frequently asked questions.

2. examples - Example instances of json strings produced by different CTTV pipeline projects.

3. json_schema - The primary json schema against which json instances will be validated.

4. ontology - The CTTV core association ontology.

5. scripts - JSON-preparation scripts written by CTTV project members.

6. packages - Software packages written for generating CTTV "evidence string" objects

What is the CTTV TD-association format?

Aim

The CTTV “TD-association format” defines a graph-based model for capturing target (i.e. a gene or a protein) to disease evidence from a number of disparate data sources. It is effectively the “currency” for the CTTV database project (CTTV001) to receive and process disease evidence from different CTTV workstreams.

Description of the format

The platform is currently accepting data in JSON (javascript object notation) format. Please use the provided JSON schema to prepare/fit your data to this model.

Current status

We are preparing a JSON schema to ensure validity of the data provided. We may develop formats in addition to JSON in the future for pulling data into the system.