| - |
{"validated_against_schema_version"} |
This is a required field. Please indicate which version of the CTTV schema you have validated your JSON data against. |
| {"unique_association_fields"} |
{"unique_association_fields"} |
This is the same as before and is a required field. Just to clarify, if you have an array of values that make a particular key unique, please provide these as comma-separated concatenated values. See example. |
| {"provenance"}{"association_score"} |
{"evidence"}{"association_score"} |
This is now a required field. Ability to set to 'null' if it does not apply. See help |
| {"provenance"} |
{"evidence"} |
Field has been renamed. |
| {"provenance"}{"type"} |
{"evidence"}{"provenance_type"} |
Field has been renamed. |
| {"biological_subject"}{"experimental_evidence_specific"}, {"provenance"}{"experimental_evidence_specific"}, {"biological_object"}{"experimental_evidence_specific"} |
{"biological_subject"}{"experiment_specific"}, {"evidence"}{"experiment_specific"}, {"biological_object"}{"experiment_specific"} |
Fields have been renamed. |
| {"biological_subject"}{"association_context"} |
{"biological_subject"}{"target_type"} |
Field has been renamed. |
| {"provenance"}{"type"}{"literature"}{"pubmed_refs"} |
{"evidence"}{"provenance_type"}{"literature"}{"pubmed_refs"} |
This used to be an array of integers. Now it is an array of "http://identifiers.org/pubmed/[0-9]+$" pattern-matched URIs. See help |
| {"biological_subject"}{"about"} |
{"biological_subject"}{"about"} |
Now an array of "^http://identifiers.org/.+/.+" pattern-matched URIs. See help |
| {"biological_subject"}{"properties"}{"association_context"} |
{"biological_subject"}{"properties"}{"target_type"} |
Now a "^http://identifiers.org/cttv[.]{1,1}target/.+$" pattern-matched URI. See help |
| {"biological_subject"}{"properties"}{"activity"} |
{"biological_subject"}{"properties"}{"activity"} |
Now a "^http://identifiers.org/cttv[.]{1,1}activity/.+$" pattern-matched URI. See help |
| {"biological_object"}{"about"} |
{"biological_object"}{"about"} |
Now an array of "^http://identifiers.org/.+/.+" pattern-matched URIs. See help |
| {"provenance"}{"evidence_codes"} |
{"evidence"}{"evidence_codes"} |
Now an array of "^http://identifiers.org/eco/ECO:[0-9]{7,7}$" pattern-matched URIs. See help |
| Note about identifiers.org URIs |
Note about identifiers.org URIs |
Please make sure you use the correct URIs! e.g. experimental factors ontology (EFO) = http://identifiers.org/efo/nnnnnnn, evidence codes ontology (ECO) = http://identifiers.org/eco/ECO:nnnnnnn, Orphanet = http://identifiers.org/orphanet/nnnnn |
| {provenance}{type}{database}{dbxref}{id} |
{evidence}{provenance_type}{database}{dbxref}{id} |
This now accepts only identifier.org namespaces e.g. http://identifiers.org/orphanet |
| {provenance}{type}{database}{dbxref}{url} |
{evidence}{provenance_type}{database}{dbxref}{url} |
This now accepts only identifier.org namespaces e.g. http://identifiers.org/orphanet/93298 |