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clarify duplicate comments
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JoeVieira authored Sep 12, 2023
1 parent 39be56d commit c79d7bd
Showing 1 changed file with 1 addition and 1 deletion.
Original file line number Diff line number Diff line change
Expand Up @@ -632,7 +632,7 @@ class GroupReadsByUmi
// Then group the records in the right order (assigned tag, read name, r1, r2)
val templatesByMi = templates.groupBy { t => t.r1.get.apply[String](this.assignTag) }

// If marking duplicate, assign bitflag to non-duplicate
// If marking duplicates, assign bitflag to all duplicate reads
if (this.markDup) {
templatesByMi.values.foreach(t => assignRepReadToGroup(t))
}
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