Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Chic hdf #729

Merged
merged 54 commits into from
Jun 29, 2021
Merged

Chic hdf #729

merged 54 commits into from
Jun 29, 2021

Conversation

joachimwolff
Copy link
Collaborator

  • Flake8 passes (flake8 . --exclude=.venv,.build,planemo_test_env,build --ignore=E501,F403,E402,F999,F405,E712)
  • Local tests pass (py.test hicexplorer --doctest-modules)

Replace text file-based viewpoint computations with data stored in HDF files.

…e also without loosepvalue and xfoldbackground. make plot options allgenes and single available
…of threads is greater the number of processed elements
…ake readBead function to accept also space seperated files
…ata and a bug fix in hicBuildMatrix for a case where the region is not defined
@joachimwolff joachimwolff merged commit 0eac21e into develop Jun 29, 2021
@joachimwolff joachimwolff deleted the chicHDF branch August 13, 2021 07:02
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant