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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 845 124

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 741 219

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 256 74

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 234 53

  5. py2bit py2bit Public

    A python library for accessing 2bit files

    C 21 9

  6. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 5

Repositories

Showing 10 of 13 repositories
  • HiCMatrix Public
    deeptools/HiCMatrix’s past year of commit activity
    Python 13 GPL-3.0 8 0 1 Updated Sep 4, 2025
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools’s past year of commit activity
    Python 741 219 158 20 Updated Jul 23, 2025
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer’s past year of commit activity
    Python 256 GPL-3.0 74 152 (1 issue needs help) 0 Updated Jul 17, 2025
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit’s past year of commit activity
    C 21 MIT 9 0 0 Updated Jan 21, 2025
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig’s past year of commit activity
    C 234 MIT 53 12 0 Updated Jan 17, 2025
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks’s past year of commit activity
    Python 845 GPL-3.0 123 26 7 Updated Jul 10, 2024
  • github-actions Public

    Play around with github actions

    deeptools/github-actions’s past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm’s past year of commit activity
    C++ 10 4 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser’s past year of commit activity
    JavaScript 18 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    deeptools/hicBuildMatrixCpp’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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