Skip to content

Issues: common-workflow-language/cwltool

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
436 Open 369 Closed
436 Open 369 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Singularity: wrong image path upon initial pull bug help wanted
#889 opened Sep 1, 2018 by KerstenBreuer
👍 5
"entry" content interpretation
#1124 opened May 30, 2019 by tatahin
4 👍 4
'--pack' option fails when '--validate' works fine bug help wanted
#1103 opened Apr 23, 2019 by serge2016
1 👍 4
providing a string for an input with type File needs a better error message enhancement good first issue help wanted
#758 opened May 18, 2018 by mr-c
4 👍 3
Validation: matching types flagged as incompatible for multiple inputs
#929 opened Oct 2, 2018 by ghost
5 👍 2
docker: Error response from daemon: invalid mount config for type "bind": bind source path does not exist
#1433 opened Apr 8, 2021 by tetron
5 👍 2
[Feature Request] Handling exception message in JavascriptExpression
#785 opened Jun 11, 2018 by tom-tan
1 👍 2
Workflow Factory should use argparse
#1031 opened Jan 9, 2019 by suecharo
👍 2
cwltool --pack generates IDs for enum symbols
#1513 opened Sep 8, 2021 by jdidion
1 👍 2
bind source path does not exist - cwltool keeps waiting / running does not stop
#1887 opened Aug 17, 2023 by jjkoehorst
2 👍 2
$include / $import fail when used to include input parameter
#751 opened May 15, 2018 by pvanheus
👍 2
ExpressionTool doesn't check output types
#1811 opened Feb 23, 2023 by GlassOfWhiskey
2 👍 2
static_checker mistakenly fails with source -> sink
#437 opened Jun 22, 2017 by michael-kotliar
👍 2
'format' key in input YAML interpreted as file bug
#568 opened Nov 15, 2017 by esanzgar
3 👍 2
cwltool --validate should error on jshint errors and certain warnings
#1874 opened Jul 6, 2023 by tetron
👍 2
add "cwltool:outdir" support for input YAML enhancement good first issue
#1837 opened May 9, 2023 by mr-c
👍 2
Using --cachedir option leaves output of workflow in cache instead of the directory the workflow is run
#86 opened May 17, 2016 by prismofeverything
7 👍 1
cwltool does not support the specification in 3.7
#793 opened Jun 14, 2018 by tom-tan
👍 1
Can double define variables without warning/error
#773 opened May 28, 2018 by gijzelaerr
👍 1
GA4GH TRS: linked files fail to resolve
#1022 opened Dec 21, 2018 by keiranmraine
1 👍 1
consider refactoring to pyfilesystem from our StdFsAccess help wanted
#922 opened Sep 27, 2018 by mr-c
👍 1
--validate should also validate input objects enhancement gsoc help wanted
#606 opened Jan 12, 2018 by mr-c
👍 1
double-adding requirements/hints on workflow steps
#985 opened Nov 26, 2018 by tetron
👍 1
command line input specification using custom enum not working unless they are arrays bug
#573 opened Nov 27, 2017 by esanzgar
1 👍 1
mixing of stdout/stderr with --parallel
#903 opened Sep 13, 2018 by ltirrell
2 👍 1
ProTip! Adding no:label will show everything without a label.