Skip to content

Issues: common-workflow-language/cwltool

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
436 Open 369 Closed
436 Open 369 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Exact definition of --tmp-outdir-prefix and --tmpdir-prefix is ambiguous
#3 opened Oct 17, 2015 by schultzmattd
CWLtool issue with passing a list of scatter/gathered outputs into a program that accepts a list
#17 opened Nov 3, 2015 by jstjohn
Validation error... could not validate field secondaryFiles
#23 opened Nov 24, 2015 by jeremiahsavage
--update should produce yaml if given yaml enhancement
#51 opened Mar 10, 2016 by mr-c
Error collecting output for array of secondaryFiles
#57 opened Mar 29, 2016 by jeremiahsavage
content-type for remote descriptors
#98 opened Jun 15, 2016 by denis-yuen
output yaml instead of json
#109 opened Jun 30, 2016 by mr-c
test false negative with SoftwareRequirement
#120 opened Jul 8, 2016 by mr-c
New cwltool error on basic gzip job
#130 opened Jul 19, 2016 by lijiayong
@manu-chroma
re-think continuous deployment model
#141 opened Aug 2, 2016 by mr-c
Files in InitialWorkDir should have path in outdir
#146 opened Aug 3, 2016 by tetron
transient UTF parsing errors
#172 opened Aug 25, 2016 by mr-c
rerunning workflows with --cachedir sometimes repeats steps despite no changes to input
#173 opened Aug 25, 2016 by cnjr2
docker volume on docker-machine
#179 opened Sep 1, 2016 by forrestzhang
cwltool requires type field on Process inputs contrary to the spec
#186 opened Sep 9, 2016 by mr-c
import directives not followed in input job objects if cwl:tool is used bug help wanted
#188 opened Sep 11, 2016 by mr-c
add flag to ignore file formats
#217 opened Nov 1, 2016 by mr-c
anonymous directory are allowed to only have a listing
#226 opened Nov 13, 2016 by mr-c
better error message when InitialWorkDir listing is a single entry instead of an array
#249 opened Dec 9, 2016 by mr-c
doc_loader does not pickle correctly
#259 opened Dec 23, 2016 by mr-c
document what --basedir does
#278 opened Jan 19, 2017 by mr-c
add additional code checks to automated testing
#286 opened Feb 8, 2017 by mr-c
3 tasks
document that docker-in-virtualbox using shared folders doesn't work
#290 opened Feb 15, 2017 by mr-c
Type mismatch between source and sink when using merge_nested for single-item list of input link
#309 opened Feb 27, 2017 by michael-kotliar
no html5lib? print useful warning, don't fail
#347 opened Mar 24, 2017 by mr-c
ProTip! Updated in the last three days: updated:>2025-03-04.