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436 Open 369 Closed
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Issues list

Field is not valid: CommentedSeq expected null or string
#1673 opened May 30, 2022 by jjkoehorst
3
Capture last modification date of remote file
#1672 opened May 30, 2022 by RenskeW
Scatter before a when occurs
#1668 opened May 20, 2022 by jjkoehorst
1
2
Avoid downloading expression tool inputs and outputs to disk?
#1666 opened May 13, 2022 by adamnovak
CWLProv cached runs
#1664 opened May 6, 2022 by jjkoehorst
1
Option for using self-hosted node:slim
#1659 opened May 4, 2022 by Stikus
4
Set number of cores for executing a single CommandLineTool
#1651 opened Mar 25, 2022 by mr-c
Missing error message when using empty file
#1650 opened Mar 25, 2022 by ALuesink
OSError: [Errno 18] Invalid cross-device link error in move os.rename(src, real_dst)
#1645 opened Mar 16, 2022 by AriBad
3
Incorrect validation warning when combining "scatter" and "when"
#1639 opened Mar 7, 2022 by tetron
cwlprov: record modification date of all input files
#1638 opened Mar 7, 2022 by mr-c
@RenskeW
Inconsistent location and name for renamed output of type File when also included in output of type Directory for CLT enhancement help wanted
#1628 opened Feb 21, 2022 by jotasi
5
CommandLineTool without baseCommand → IndexError bug good first issue help wanted
#1618 opened Feb 12, 2022 by mr-c
Enable ontology support for directories in addition to File and File[]
#1617 opened Feb 11, 2022 by kannon92
5
cwltool validate must have a warning when format is used with an invalid type (e.g. Directory) bug good first issue help wanted
#1616 opened Feb 11, 2022 by kinow
1
Deprecate cwltool --pack in favor of cwlpack from sbpack
#1611 opened Feb 2, 2022 by mr-c
13 tasks
code coverage measurement: mismapped file paths
#1610 opened Feb 2, 2022 by mr-c
CWLProv: add option exclude raw copies of the data
#1586 opened Jan 6, 2022 by mr-c
3 tasks
@jjkoehorst
4
cached cwl.output.json contains docker file path references
#1573 opened Dec 7, 2021 by tschoonj
1
Update the singularity command line parameter for apptainer
#1572 opened Dec 1, 2021 by kinow
8
snakemake 6.8.0 → CWL
#1555 opened Oct 26, 2021 by mr-c
5
--make-template fails to create valid yaml on mixed input types
#1539 opened Sep 30, 2021 by alexiswl
2
Include tested dependency resolver for Spack
#1538 opened Sep 29, 2021 by mr-c
Document CWL_SINGULARITY_CACHE good first issue gsoc
#1537 opened Sep 29, 2021 by mr-c
report prog as "cwltool" if invoked as "cwl-runner" good first issue gsoc
#1535 opened Sep 27, 2021 by mr-c
ProTip! Exclude everything labeled bug with -label:bug.