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Alternate assembly seqences in Primary assembly seqence position
#51
opened Nov 2, 2020 by
Xuelei-Dai
updated Nov 2, 2020
100s of chimeric mitochondrial genome contigs and same region duplicated in 2 contigs
#68
opened Jan 27, 2021 by
rb-commits
updated Jan 27, 2021
partial contigs with half-reduced coverage ccs reads is misassembled? No, by contrast, it has assembled very long and novel tandem repeat sequeces
#50
opened Oct 27, 2020 by
mydongan
updated Jan 28, 2021
Manually specify where het and hom k-mer peaks are - hifiasm's guess incorrect.
#55
opened Dec 2, 2020 by
conchoecia
updated Feb 23, 2021
The assembly of contaminated samples is seriously too large
#63
opened Jan 5, 2021 by
zxgsy520
updated Feb 23, 2021
Hic mode finishes without outputing phased contigs
#88
opened Mar 18, 2021 by
dabitz
updated Mar 18, 2021
order in the trio files impacts assembly results
#81
opened Mar 9, 2021 by
chklopp
updated Mar 18, 2021
hi-c issue - hap1 is too large, hap2 too small
#85
opened Mar 15, 2021 by
tcb72
updated Mar 19, 2021
Separating haplotypes that occur at lower coverage
#92
opened Apr 6, 2021 by
tcb72
updated Apr 8, 2021
Larger size of genome assembly than what expected
#102
opened Apr 18, 2021 by
Karimi-81
updated Apr 18, 2021
HiC mode reports larger haplotypes assembly sizes
#96
opened Apr 11, 2021 by
dabitz
updated Apr 26, 2021
Version 0.15 / bp.p_ctg.gfa versus bp.hap?.p_ctg.gfa N50
#106
opened Apr 27, 2021 by
chklopp
updated Apr 27, 2021
Changing homozygous and heterozygous peak values
#107
opened Apr 29, 2021 by
chklopp
updated Apr 30, 2021
hifiasm performs very well on simulated data using Chr8 T2T haploid sequence (simulated as diploid with simulated Q30 HiFi reads)
#108
opened May 3, 2021 by
jelber2
updated May 5, 2021
continuity drops in Hi-C resolved contigs, compared with primary contigs
#115
opened May 10, 2021 by
zhangrengang
updated May 11, 2021
The assembled genome is twice as large as expected in HIC mode
#114
opened May 9, 2021 by
jinxin112233
updated May 11, 2021
asm.bp.a_ctg.gfa file (alternate contigs) is missing
#118
opened May 12, 2021 by
agroppi
updated May 13, 2021
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