1.43.0

Added

• Synonym retrieval in related genes ideogram (#1764)

Changed

• Updated color contrasts, aria-labels, and language attribute on homepage for accessibility (#1763)
• Denoise Sentry, note interactivity, and remove old caches in related genes ideogram (#1764)
• Update ingest docker image to 1.26.0 for AnnData 0.9 and processed expression extraction (#1767)

Fixed

• Occasional misrendering in RNA diagrams upon exon splice toggle (#1764)
• Avoid "Too many open files" error in Vite HMR (#1765)

1.42.0

Added

• Data model for user-uploaded differential expression files (#1753, #1756)
• Ingest-related integration work for user-uploaded differential expression files (#1758)

Changed

• Sort pairwise comparison annotation labels naturally (#1756)
• Speed up page load for signed-in users registered for Terra (#1760)

Fixed

• Docker image tag on hotfix test deployments (#1755)
• AbTest dependencies/validations and associated tests (#1759)
• Initial width of violin plot (#1757)

1.41.0

Added

• Upload UI updates and Upload Feedback link (#1743)
• Troubleshooting guidance for dockerized -> non-dockerized cleanup (#1752)

Changed

• Mark non-parsable AnnData files as "reference" (#1751)
• Enforce metadata convention on all parsable AnnData files (#1751)
• Update to ingest release 1.25.1 - upgrade ingest to Python 3.10 (#1748)

Fixed

• Reliably load differential expression table, and other bucket data (#1747)

1.40.0

Added

• Further integration for AnnData file upload & parsing (#1745)
• New library preparation protocol option in upload wizard (#1749)

Changed

• Package updates:
  • rack 2.2.6.4 (#1746)
  • webpack 5.76.1 (#1741)

1.39.0

Added

• Split view for upload options and AnnData Beta upload tab (#1733)

Changed

• Configurable RAM limits for docker-compose in local development (#1737)

Fixed

• Restore fast native local development environment (#1738)
• Fix upload on Chrome >= 111 on Mac (#1742)

1.38.0

Added

• Migration to delete non-cell type differential expression results, for better DE accuracy (#1736)
• Log ingest exit status code to Mixpanel, for insight on unhandled errors (#1728)
• Log Vite HMR, improving local performance diagnostics (#1731)

Changed

• Show "Differential expression" button whenever study has DE results, for discoverability (#1734)

Fixed

• Skip gzipping sequence/AnnData files before pushing to GCS (#1735)
• Nil-safed StudyFileBundle getter methods (#1732)

1.37.0

Added

• Adding lightweight A/B test framework (#1721)
• Admin interface for managing A/B tests (#1725)
• Begin A/B test for showing "Explore" tab by default (#1727)

Fixed

• Restore the Study Usage page (#1724)
• Fixing typo in share form toggle_id (#1726)
• Suppress Info level alert logging to Sentry (#1729)

1.36.0

Added

• Find any gene by name in differential expression table (#1716)

Changed

• Restrict automated differential expression calculation to "cell type" analog annotations (#1715)
• Remove the links to study usage page (#1719)

Fixed

• Patch bug in Explore Tab after multi gene search and annotation & consensus toggling (#1717)

1.35.1

Changed

• Updating base Docker image, Rails to 6.1.7.1 (#1713)
• Automated building/pulling Docker image for local development (#1713)
• New UX for AnnData uploads (#1714)

Fixed

• Update instructions for Terra Terms of Service (#1718)

1.35.0

Added

• Enable downloading differential expression results (#1704)
• RNA and protein diagrams in related genes ideogram (#1706)

Changed

• Default sessions to 24 hours, with opt-in 15 minute sessions (#1707)
• Constrain possible test user email values in CI (#1705)
• Truncate all GCP resource labels to 63 characters (#1708)
• Bump rack from 2.2.4 to 2.2.6.2 (#1710)
• Bump globalid from 1.0.0 to 1.0.1 (#1711)

Fixed

• Explore tab rendering for AnnData files (#1703)
• Reduce failed CodeCov PR checks (#1709)