1.86.1

Changed

• Update to Ingest 1.37.1: Use gene name instead of gene ID for DE from CELLxGENE AnnData #2176

Fixed

• Allow updates in AnnData expression form, extract raw counts if specified (SCP-5871) #2175

1.86.0

Added

• Autocomplete on gene ID and symbol in Explore tab (#2166)
• Scalable expression overlays for pathway diagrams (#2172)

Changed

• Return 404 when specified annotation is not found (#2169)
• Deny obvious malicious requests from security scans (#2169)

Fixed

• Propagate expression axis label for AnnData studies (#2170)

1.85.0

Added

• More robust AnnData ingest: selective cleanup on OOM retries (#2165)

1.84.0

Added

• Gene name search for CELLxGENE AnnData, via Ingest Pipeline 1.37.0 (#2163)

Changed

• Bump rexml from 3.3.6 to 3.3.9 (#2162)

1.83.0

Added

• Enable canvas recording for Sentry replays (#2151)
• High-level metadata preview in search results (#2155)
• Automatic retries of OOM failures for ingest processes (#2154)
• Update to Ingest 1.36.1, coerce AnnData boolean metadata to categorical annotations (#2161)

Changed

Fixed

• Prevent raw counts requirement enforcement when deleting files (#2156)
• Remove unused name-as-id method (#2157)
• Restore cell filtering panel for IGV / ATAC multiome (#2158)

1.82.0

Added

• Instant validation for only-alphanumeric-underscore headers (#2143)

Changed

• Dynamically hide cell filtering panel when not applicable (#2148)

Fixed

• Address race condition in reporting ingestSummary events to Mixpanel (#2144)
• Validation error when gzipped file lacks proper extension (#2145)
• Don't create default cluster fragment for reference AnnData files (#2150)
• Ignore unsynced directories in bulk download (#2149)

1.81.0

Added

• Enable remote CSFV bypass (#2146)

Changed

• Omit .gz check for RDS files (#2146)

1.80.0

Added

• Spinner for remote file validation, more responsive timing (#2133)
• Fast ontology validation for AnnData (#2129)
• Reusable component for adding styled links to home page (#2140)

Changed

• Create default cluster for AnnData upload unless specified (#2127)
• Bump vite from 4.5.3 to 4.5.5 #2131

Fixed

• Handle missing cluster-based annotation in plot data cache (#2128)
• Ensure email on failure of DE compute or other "special actions" (#2130)
• Clear cached files when using Replace feature in CSFV (#2135)
• Handle nil file size in download link (#2134)
• Restore form updates in AnnData upload UX (#2132)

1.79.0

Added

• Fast validation for remote AnnData headers (#2118)
• Fast validation for AnnData rows (#2122)

Changed

• Add machineType, action, and exitCode to ingestSummary Mixpanel event (#2120)
• Refine machine type scaling for AnnData files during extract, differential expression (#2123)

Fixed

• Ignore differential expression jobs when reporting ingestSummary event for AnnData files (#2119)
• Prevent orphaned data during AnnData ingest when single extraction parse fails (#2121)
• Only extract raw counts data from AnnData when specified (#2121)
• Fix upload on non-visualizable files in AnnData UX (#2125)

1.78.0

Added

• Instant header validation for local AnnData files (#2112)
• Pathway diagrams via related genes ideogram (#2104)
• Automated differential expression calculation for AnnData files (#2116)

Changed

• UX refinements for AnnData upload (#2111)
• Bump rexml from 3.3.3 to 3.3.6 (#2115)