1.77.1

Changed

• Renamed release branch to main (#2107)
• Updated metadata explainer image for AnnData upload (#2108)

Fixed

• Fix setting tab parameter for analytics (#2106)
• Fix expression scatter plot upon legend filter (#2109)

1.77.0

Added

• Analytics logging to indicate whether study is public (#2100)

Changed

• Enable subsampling of AnnData files (#2102)

Fixed

• Legend filter for labels with commas (#2099)
• Don't clobber parse_status when updating AnnData files (#2095)
• Hide Terra profile warning in public studies (#2100)

1.76.3

Fixed

• Disable CSFV for miscellaneous file types using "bucket path" option (#2096)

1.76.2

Fixed

• Omit subsample parameter if cluster is not subsampled #2093

1.76.1

Added

Changed

• Modify array of machine types for AnnData ingest flexibility (#2089)

Fixed

• Handle nil labels when sorting plot legends (#2086)
• Restoring color customization for scatter plots (#2085)
• Hide subsampling menu if cluster is not subsampled (#2090)

1.76.0

Added

• Cell filtering using subsampled data (#2078)
• Persistent label colors for group-based annotations (#2076)
• Share, save IGV cell filtering results (#2079, #2080)
• Drag, zoom, improved search support for cell filtering in IGV (#2075)

Changed

• Sort DE table by Scanpy score by default (#2077)

Fixed

• Prevent duplicate cell index arrays on renamed clusters (#2081)
• Match server- and client-side label sorting in plot legends (#2084)
• Prevent clobbering trace color when filtering violin plots (#2082)

1.75.1

Changed

• Remove Google Analytics (#2069)

Fixed

• Maintain correct counts & color assignments in scatter plot legends for spatial UX (#2070)
• Ignore studies with author-provided differential expression outputs when running backfill jobs (#2071)
• Use consistent colors in scatter plots and violin plots (#2073)

1.75.0

Added

• Filter IGV by cell annotations, tailor ATAC rendering (feature flagged, #2053)
• Convey limit on number of plots for spatial studies (#2064)

Changed

• Migrate to Google Secret Manager from Vault for local development (#2049)
• Change CD architecture to use Google Secret Manager (#2054, #2055, #2056, #2057, #2058, #2059, #2060, #2061, #2063)
• Include mtx, AnnData and Seurat file extensions to allowed Miscellaneous file extensions (#2051)
• Update library_preparation_protocol dropdown (#2052)
• Make IGV filtering instant (#2068)
• Gem/package updates
  • Updated braces to 3.0.3 (#2050)
  • Bump ws from 5.2.3 to 5.2.4 (#2062)
  • Rails 6.1.7.8 (#2065)

Fixed

• Upload chooser issues in Firefox / Safari browsers (#2066)

1.74.0

Added

• Show ATAC fragments in IGV, enable BED file upload (#2041)

Changed

• Remove superseded Selenium WebDriver UI tests (#2042)
• Updating to rails-baseimage:2.3.0 (#2036, #2038)
  • Ruby 3.2.2, Node 20
• Bump nokogiri to 1.16.5 (#2037)
• Ignore incorrect url_safe_name when loading studies, preserve query parameters when using legacy redirect (#2043)
• Add new has_<modality> columns to BigQuery schemas (#2045)
• Update to scp-ingest-pipeline:1.31.0 (#2047)

Fixed

• Added concurrency group for deployment workflows (#2033)
• Skip check_bucket_read_access in smoke test (#2035)

1.73.0

Added

• Terra FastPass integration for new studies (#2030)

Changed

• Expanding automated exploratory differential expression calculations (#2029)

Fixed

• Add language regarding Terra Terms of Service and cookies banner (#2032)
• Harmonize positioning of bookmark icon (#2031)