Code

Quicviz yg#56

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Merged

lfleming1022 merged 23 commits intomasterbroadinstitute/TAG-public:masterfrom quicviz_ygbroadinstitute/TAG-public:quicviz_ygCopy head branch name to clipboardApr 26, 2024

+141-1

Commits

Commits on Apr 17, 2024

• first commit of QUICviz WDL

  yueyaog

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  c635de1

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Commits on Apr 18, 2024

• adjust the output path

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  ddb59ba

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• make docker image an optional input

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  7f392e3

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• specify R script PATH

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  12600b8

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• test Rscript with help message

  yueyaog

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  520a4be

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• modified QUICviz docker image and update the R command

  yueyaog

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  89d5a98

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• fix wrong path

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  045b6da

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Commits on Apr 19, 2024

• created the output folder before running QUICviz

  yueyaog

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  d78b5b0

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• updated the output directory

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  93eae4e

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• added output directory

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  aa3323c

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Commits on Apr 22, 2024

• added sep to the arrayed file

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  84aadff

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• edited output path

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  c759bb9

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• updated the conda environment

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  639b7fc

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• updated the environment

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  b38b3fb

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• updated the merge file type

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  9c7439c

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• sort output before merge

  yueyaog

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  a942592

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• updated the PYTHON format

  yueyaog

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  d2dad3c

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• separate the files

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  a88d4ca

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• Fix output path

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  e0dbb9e

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Commits on Apr 26, 2024

• make resource optional input

  yueyaog

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  4dcfd44

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• calling python using python3 in WDL

  yueyaog

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  949e551

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• updated the default quicviz docker image

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  abf80b3

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• added unit to mem

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  41bcb26

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