Quicviz yg #56
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Quicviz yg #56
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PECGS-QUICviz/QUICviz.wdl
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| } | ||
| runtime { | ||
| docker: quicvizDocker | ||
| memory: "16 GB" |
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Do we want to make memory a variable?
PECGS-QUICviz/QUICviz.wdl
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| } | ||
| runtime { | ||
| docker: "us.gcr.io/tag-team-160914/neovax-parsley:2.2.1.0" | ||
| memory: "16 GB" |
yueyaog
commented
Apr 26, 2024
PECGS-QUICviz/QUICviz.wdl
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| --tumor_seg_oncotated ~{oncotatedCalledTumor} \ | ||
| --output_dir outputs/ | ||
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| ls outputs/ |
PECGS-QUICviz/QUICviz.wdl
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| command <<< | ||
| mkdir -p output/images | ||
| for i in `ls ~{sep=" " plot}`; do mv $i output/images/; done | ||
| ls output/images/ |
PECGS-QUICviz/QUICviz.wdl
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| for i in `ls ~{sep=" " plot}`; do mv $i output/images/; done | ||
| ls output/images/ | ||
| source activate NeoVax-Input-Parser | ||
| pip3 install img2pdf |
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install this in QUICviz docker
lfleming1022
approved these changes
Apr 26, 2024
stellaning1120
pushed a commit
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Sep 23, 2024
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QUICviz WDL that is used for PECGS CNV analysis