Add species to genome search results table.

biosustain · Dec 13, 2024 · 6ef5a71 · 6ef5a71
2 parents a6535e9 + bd6a02c
commit 6ef5a71
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Showing 2 changed files with 13 additions and 6 deletions.
diff --git a/search/views.py b/search/views.py
@@ -193,6 +193,7 @@ def download_search_genomes_csv(request):
     genome_keys = [
         "pangenome_analysis",
         "genome_id",
+        "species",
         "strain",
         "phylo_group",
         "gc_content",
@@ -269,6 +270,7 @@ def genomes_json(request):
     genome_keys = [
         "pangenome_analysis",
         "genome_id",
+        "species",
         "strain",
         "phylo_group",
         "gc_content",

diff --git a/templates/search/search_results_genomes.html b/templates/search/search_results_genomes.html
@@ -12,6 +12,7 @@
     <thead>
     <tr>
         <th>Genome</th>
+        <th>Species</th>
         <th>Stain (NCBI)</th>
         <th>Phylo Group</th>
         <th>%GC</th>
@@ -27,6 +28,7 @@
     <tfoot>
         <tr>
             <th>Genome</th>
+            <th>Species</th>
             <th>Stain (NCBI)</th>
             <th>Phylo Group</th>
             <th>%GC</th>
@@ -65,19 +67,22 @@
                 },
                 {
                     data: '2',
-                    className: 'ncbi_strain',
                 },
                 {
                     data: '3',
+                    className: 'ncbi_strain',
                 },
                 {
                     data: '4',
+                },
+                {
+                    data: '5',
                     render: function (data, type, row) {
                         return (data*100).toFixed(2)
                     },
                 },
                 {
-                    data: '5',
+                    data: '6',
                     render: function (data, type, row) {
                         if (data == "?") {
                             return "-"
@@ -88,7 +93,7 @@
                     className: 'country',
                 },
                 {
-                    data: '6',
+                    data: '7',
                     className: 'broad_context',
                     render: function (data, type, row) {
                         if (data == "?" || data == "Missing" || data == "missing") {
@@ -99,7 +104,7 @@
                     },
                 },
                 {
-                    data: '7',
+                    data: '8',
                     className: 'local_context',
                     render: function (data, type, row) {
                         if (data == "?" || data == "Missing" || data == "missing") {
@@ -110,7 +115,7 @@
                     },
                 },
                 {
-                    data: '8',
+                    data: '9',
                     className: 'extra_context',
                     render: function (data, type, row) {
                         if (data == "?" || data == "Missing" || data == "missing") {
@@ -121,7 +126,7 @@
                     },
                 },
                 {
-                    data: '9',
+                    data: '10',
                     className: 'isolation_source',
                     render: function (data, type, row) {
                         if (data == "?" || data == "Missing" || data == "missing") {