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Added search for genomes + isolation sources/countries
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,181 @@ | ||
| {% extends "components/panel_universal.html" %} | ||
| {% block panel_header %} | ||
| <form action="{% url 'download_search_genomes_csv' %}" target="_blank" method="GET" style="display: inline"> | ||
| <input type="hidden" name="q" value="{{ request.GET.q }}" /> | ||
| <button class="btn btn-outline-dark btn-sm" type="submit"><svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" style="display: inline; position: relative; top: -2px;" fill="currentColor" class="bi bi-filetype-csv" viewBox="0 0 16 16"> | ||
| <path fill-rule="evenodd" d="M14 4.5V14a2 2 0 0 1-2 2h-1v-1h1a1 1 0 0 0 1-1V4.5h-2A1.5 1.5 0 0 1 9.5 3V1H4a1 1 0 0 0-1 1v9H2V2a2 2 0 0 1 2-2h5.5zM3.517 14.841a1.13 1.13 0 0 0 .401.823q.195.162.478.252.284.091.665.091.507 0 .859-.158.354-.158.539-.44.187-.284.187-.656 0-.336-.134-.56a1 1 0 0 0-.375-.357 2 2 0 0 0-.566-.21l-.621-.144a1 1 0 0 1-.404-.176.37.37 0 0 1-.144-.299q0-.234.185-.384.188-.152.512-.152.214 0 .37.068a.6.6 0 0 1 .246.181.56.56 0 0 1 .12.258h.75a1.1 1.1 0 0 0-.2-.566 1.2 1.2 0 0 0-.5-.41 1.8 1.8 0 0 0-.78-.152q-.439 0-.776.15-.337.149-.527.421-.19.273-.19.639 0 .302.122.524.124.223.352.367.228.143.539.213l.618.144q.31.073.463.193a.39.39 0 0 1 .152.326.5.5 0 0 1-.085.29.56.56 0 0 1-.255.193q-.167.07-.413.07-.175 0-.32-.04a.8.8 0 0 1-.248-.115.58.58 0 0 1-.255-.384zM.806 13.693q0-.373.102-.633a.87.87 0 0 1 .302-.399.8.8 0 0 1 .475-.137q.225 0 .398.097a.7.7 0 0 1 .272.26.85.85 0 0 1 .12.381h.765v-.072a1.33 1.33 0 0 0-.466-.964 1.4 1.4 0 0 0-.489-.272 1.8 1.8 0 0 0-.606-.097q-.534 0-.911.223-.375.222-.572.632-.195.41-.196.979v.498q0 .568.193.976.197.407.572.626.375.217.914.217.439 0 .785-.164t.55-.454a1.27 1.27 0 0 0 .226-.674v-.076h-.764a.8.8 0 0 1-.118.363.7.7 0 0 1-.272.25.9.9 0 0 1-.401.087.85.85 0 0 1-.478-.132.83.83 0 0 1-.299-.392 1.7 1.7 0 0 1-.102-.627zm8.239 2.238h-.953l-1.338-3.999h.917l.896 3.138h.038l.888-3.138h.879z"/> | ||
| </svg></button> | ||
| </form> | ||
| {% endblock %} | ||
| {% block panel_content %} | ||
| <table id="genomes_table" class="table table-hover display" style="width: 100%;"> | ||
| <thead> | ||
| <tr> | ||
| <th>Genome</th> | ||
| <th>Stain (NCBI)</th> | ||
| <th>Phylo Group</th> | ||
| <th>%GC</th> | ||
| <th>Country</th> | ||
| <th>Broad Context</th> | ||
| <th>Local Context</th> | ||
| <th>Extra Context</th> | ||
| <th>Isolation Source</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody id="tbody"> | ||
| </tbody> | ||
| <tfoot> | ||
| <tr> | ||
| <th>Genome</th> | ||
| <th>Stain (NCBI)</th> | ||
| <th>Phylo Group</th> | ||
| <th>%GC</th> | ||
| <th>Country</th> | ||
| <th>Broad Context</th> | ||
| <th>Local Context</th> | ||
| <th>Extra Context</th> | ||
| <th>Isolation Source</th> | ||
| </tr> | ||
| </tfoot> | ||
| </table> | ||
| <script> | ||
| var genomes_table = null; | ||
|
|
||
| $(document).ready(async function () { | ||
| genomes_table = $('#genomes_table').DataTable({ | ||
| ajax: { | ||
| url: '{% url "search_genomes_json" %}?q={{ q }}', | ||
| dataSrc: 'results', | ||
| }, | ||
| autoWidth: true, | ||
| fixedColumns: true, | ||
| scrollX: true, | ||
| lengthMenu: [ | ||
| [10, 20, 30, 40, 50, 100, -1], | ||
| [10, 20, 30, 40, 50, 100, 'All'] | ||
| ], | ||
| order: [], | ||
| columns: [ | ||
| { | ||
| data: '1', | ||
| render: function (data, type, row) { | ||
| return '<a href="{% url 'genome_info' %}?species=' + encodeURIComponent(row[0]) + '&genome_id=' + encodeURIComponent(data) + '">' + data + '</a>'; | ||
| }, | ||
| className: 'genome_id', | ||
| }, | ||
| { | ||
| data: '2', | ||
| className: 'ncbi_strain', | ||
| }, | ||
| { | ||
| data: '3', | ||
| }, | ||
| { | ||
| data: '4', | ||
| render: function (data, type, row) { | ||
| return (data*100).toFixed(2) | ||
| }, | ||
| }, | ||
| { | ||
| data: '5', | ||
| render: function (data, type, row) { | ||
| if (data == "?") { | ||
| return "-" | ||
| } else { | ||
| return data | ||
| } | ||
| }, | ||
| className: 'country', | ||
| }, | ||
| { | ||
| data: '6', | ||
| className: 'broad_context', | ||
| render: function (data, type, row) { | ||
| if (data == "?" || data == "Missing" || data == "missing") { | ||
| return "-" | ||
| } else { | ||
| return data | ||
| } | ||
| }, | ||
| }, | ||
| { | ||
| data: '7', | ||
| className: 'local_context', | ||
| render: function (data, type, row) { | ||
| if (data == "?" || data == "Missing" || data == "missing") { | ||
| return "-" | ||
| } else { | ||
| return data | ||
| } | ||
| }, | ||
| }, | ||
| { | ||
| data: '8', | ||
| className: 'extra_context', | ||
| render: function (data, type, row) { | ||
| if (data == "?" || data == "Missing" || data == "missing") { | ||
| return "-" | ||
| } else { | ||
| return data | ||
| } | ||
| }, | ||
| }, | ||
| { | ||
| data: '9', | ||
| className: 'isolation_source', | ||
| render: function (data, type, row) { | ||
| if (data == "?" || data == "Missing" || data == "missing") { | ||
| return "-" | ||
| } else { | ||
| return data | ||
| } | ||
| }, | ||
| } | ||
| ], | ||
| language: { | ||
| loadingRecords: '<span class="spinner-border" aria-hidden="true"></span>', | ||
| zeroRecords: 'Result not found.' | ||
| }, | ||
| initComplete: function () { | ||
| this.api() | ||
| .columns() | ||
| .every(function () { | ||
| var column = this; | ||
| var title = column.footer().textContent; | ||
|
|
||
| // Create input element and add event listener | ||
| $('<input type="text" class="form-control" placeholder="' + title + '" />') | ||
| .appendTo($(column.footer()).empty()) | ||
| .on('keyup change clear', function () { | ||
| if (column.search() !== this.value) { | ||
| column.search(this.value).draw(); | ||
| } | ||
| }); | ||
| }); | ||
|
|
||
| let queryString = window.location.search; | ||
| let urlParams = new URLSearchParams(queryString); | ||
| let q = urlParams.get('q') | ||
| highlightText(q); | ||
| } | ||
| }); | ||
|
|
||
| genomes_table.on("draw", function () { | ||
| let queryString = window.location.search; | ||
| let urlParams = new URLSearchParams(queryString); | ||
| let q = urlParams.get('q') | ||
| highlightText(q); | ||
| }); | ||
| genomes_table.on('xhr.dt', function (e, settings, json, xhr) { | ||
| let genomesFound = json.results.length > 0; | ||
| update_results_overview_with_genomes(genomesFound); | ||
| }); | ||
|
|
||
| // Expand row on click | ||
| $('#genomes_table tbody').on('click', 'td', function () { | ||
| const row = $(this).closest('tr'); | ||
| row.toggleClass('expanded-row'); | ||
| }); | ||
| }); | ||
| </script> | ||
| {% endblock %} |