index file for 2 cells

NetPyNE/TwoCells/index.npjson

@@ -0,0 +1,6 @@
+{
+    "mod_folder": "../TwoCells",
+    "simConfig": "reload2.py",
+    "python_run": "init.py",
+    "netParams": "reload2.py"
+}

NetPyNE/TwoCells/reload2.py

@@ -0,0 +1,38 @@
+# From https://github.com/harshagurnani/GoC_Varied_Inputs/blob/ankur/Tests/single_cell/test_single_cell_netpyne_load.py
+
+from pathlib import Path
+from netpyne import sim
+import json
+
+json_file = Path('LEMS_TwoCell_netpyne_data.json')
+netParams_dict = None
+simConfig_dict = None
+
+with json_file.open(mode='r') as f:
+    netpyne_info = json.load(f)
+
+    netParams_dict = netpyne_info['net']['params']
+    simConfig_dict = netpyne_info['simConfig']
+
+'''
+    simConfig_dict['saveJson'] = False # Prevent overwriting json gnerated by nml export
+    simConfig_dict['saveDat'] = True # Save data from this run
+    print('> Creating, simulating, analyzing...')
+    sim.createSimulateAnalyze(netParams=netParams_dict, simConfig=simConfig_dict,
+                                  output=False)
+
+print(' - simConfig_dict (%s) with keys: \n      %s'%(type(simConfig_dict),simConfig_dict.keys()))
+print(' - netParams_dict (%s) with keys: \n      %s'%(type(netParams_dict),netParams_dict.keys()))
+print(" - netParams_dict['cellParams']: \n      %s"%(netParams_dict['cellParams']))
+'''
+
+from netpyne.specs.simConfig import SimConfig
+from netpyne.specs.netParams import NetParams
+
+cfg = SimConfig(simConfig_dict)
+netParams = NetParams(netParams_dict)
+print(' - simConfig (%s) with keys: \n      %s'%(type(cfg),cfg.todict().keys()))
+print(' - netParams (%s) with keys: \n      %s'%(type(netParams),netParams.todict().keys()))
+
+
+print('> Done...')