Add index file for HH

OpenSourceBrain · May 2, 2024 · d8ec8bf · d8ec8bf
1 parent cbf7c32
commit d8ec8bf
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diff --git a/NetPyNE/HHSmall/HHSmall.py b/NetPyNE/HHSmall/HHSmall.py
@@ -98,3 +98,8 @@ def generate_netParams(*argv):
 simConfig.analysis['plotRaster'] = True  # Plot raster
 simConfig.analysis['plotTraces'] = {'include': [2]}  # Plot raster
 simConfig.analysis['plot2Dnet'] = True  # Plot 2D net cells and connections
+
+simConfig.validateNetParams=True
+
+cfg = simConfig
+netParams = generate_netParams(None)
diff --git a/NetPyNE/HHSmall/index.npjson b/NetPyNE/HHSmall/index.npjson
@@ -0,0 +1,6 @@
+{
+    "mod_folder": "../HHSmall",
+    "simConfig": "HHSmall.py",
+    "python_run": "init.py",
+    "netParams": "HHSmall.py"
+}
diff --git a/NetPyNE/HHSmall/init.py b/NetPyNE/HHSmall/init.py
@@ -0,0 +1,10 @@
+"""
+init.py
+
+Starting script to run NetPyNE-based model.
+"""
+
+from netpyne import sim
+
+cfg, netParams = sim.loadFromIndexFile('index.npjson')
+sim.createSimulateAnalyze(netParams, cfg)