Development#46

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Julian-W98 wants to merge 32 commits intomainfrom

Commits on Oct 29, 2025

Refactore architecture (#43)
Julian-W98
authored

Commits on Oct 31, 2025

Update DataPaths and fix installation.md
Julian-W98
committed

Commits on Nov 13, 2025

integrated kmers in new structure
MiriamBalzer
committed

Commits on Nov 19, 2025

integrated and debugged kmers. works all fine
MiriamBalzer
committed

Commits on Nov 21, 2025

optimized for fasta structure: each contig is 1 sentence; optimized RAM usage; integrated switch on via config.py
MiriamBalzer
committed
harmonise PREDICT_AND_EVALUATE (#44)
Julian-W98
authored

Commits on Dec 2, 2025

Commits on Dec 8, 2025

Commits on Dec 15, 2025

Downgrade Python version to 3.11
MiriamBalzer
authored
adjusted to dos
Miriam Balzer
committed

Commits on Dec 16, 2025

Set python version to 3.11, fix preprocessing and add ToDos (#47)
Julian-W98
authored

Commits on Dec 30, 2025

Count per org (#48)
Julian-W98
authored