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Test permissions in a64fx tarball #37

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bedroge
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@bedroge bedroge commented Jul 15, 2025

The a64fx tarbal produced in #30 had weird permissions on some files; see https://gitlab.com/eessi/support/-/issues/56#note_3 for more details. In order to test if it's because of outdated build scripts or for instance an umask issue, I'm doing another build here.

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gpu-bot-ugent bot commented Jul 15, 2025

Instance eessi-bot-vsc-ugent is configured to build for:

  • architectures: x86_64/amd/zen3
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat

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bedroge commented Jul 15, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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gpu-bot-ugent bot commented Jul 15, 2025 •
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Updates by the bot instance eessi-bot-vsc-ugent (click for details)

  • received bot command build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx from bedroge

    • expanded format: build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-bot-deucalion bot commented Jul 15, 2025 •
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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2025.06-software in job dir /home/eessibot/new-bot/jobs/2025.07/pr_37/491542

date job status comment
Jul 15 11:24:26 UTC 2025 submitted job id 491542 awaits release by job manager
Jul 15 11:24:49 UTC 2025 released job awaits launch by Slurm scheduler
Jul 15 11:25:51 UTC 2025 running job 491542 is running
Jul 15 11:26:52 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-491542.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17525787210.tar.gzsize: 0 MiB (3728 bytes)
entries: 2
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2025.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2025.06/software/linux/aarch64/a64fx
2025.06/init/bash
2025.06/init/modules/EESSI/2025.06.lua
Jul 15 11:26:52 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-491542.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jul 15, 2025 

$ ls -lR 2025.06/init
2025.06/init:
total 8
-rw-rw-r-- 1 eessibot eessibot 1663 Jul 15 12:25 bash
drwxrwxr-x 3 eessibot eessibot 4096 Jul 15 12:28 modules

2025.06/init/modules:
total 4
drwxrwxr-x 2 eessibot eessibot 4096 Jul 15 12:28 EESSI

2025.06/init/modules/EESSI:
total 12
-rw-rw-r-- 1 eessibot eessibot 11131 Jul 15 12:25 2025.06.lua

This looks fine...

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bedroge commented Jul 15, 2025

One more attempt to reproduce the issue by copying some files to a completely new dir (as that's a better representation of the state where the issue popped up in #30).

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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Updates by the bot instance eessi-bot-vsc-ugent (click for details)

  • received bot command build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx from bedroge

    • expanded format: build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-bot-deucalion bot commented Jul 15, 2025 •
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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2025.06-software in job dir /home/eessibot/new-bot/jobs/2025.07/pr_37/491544

date job status comment
Jul 15 11:36:48 UTC 2025 submitted job id 491544 awaits release by job manager
Jul 15 11:36:58 UTC 2025 released job awaits launch by Slurm scheduler
Jul 15 11:38:01 UTC 2025 running job 491544 is running
Jul 15 11:39:02 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-491544.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17525794520.tar.gzsize: 0 MiB (3158 bytes)
entries: 1
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2025.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2025.06/software/linux/aarch64/a64fx
2025.06/init/modules_new/EESSI/2025.06.lua
Jul 15 11:39:02 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-491544.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jul 15, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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  • received bot command build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx from bedroge

    • expanded format: build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2025.06-software in job dir /home/eessibot/new-bot/jobs/2025.07/pr_37/491547

date job status comment
Jul 15 11:47:04 UTC 2025 submitted job id 491547 awaits release by job manager
Jul 15 11:47:07 UTC 2025 released job awaits launch by Slurm scheduler
Jul 15 11:48:10 UTC 2025 running job 491547 is running
Jul 15 11:49:11 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-491547.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17525800610.tar.gzsize: 0 MiB (3158 bytes)
entries: 1
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2025.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2025.06/software/linux/aarch64/a64fx
2025.06/init/modules_new/EESSI/2025.06.lua
Jul 15 11:49:11 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-491547.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jul 15, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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  • received bot command build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx from bedroge

    • expanded format: build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx resulted in:

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2025.06-software in job dir /home/eessibot/new-bot/jobs/2025.07/pr_37/491550

date job status comment
Jul 15 11:49:28 UTC 2025 submitted job id 491550 awaits release by job manager
Jul 15 11:50:15 UTC 2025 released job awaits launch by Slurm scheduler
Jul 15 11:51:17 UTC 2025 running job 491550 is running
Jul 15 11:52:18 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-491550.out
✅ no message matching FATAL:
❌ found message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17525802470.tar.gzsize: 0 MiB (45 bytes)
entries: 0
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2025.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2025.06/software/linux/aarch64/a64fx
no other files in tarball
Jul 15 11:52:18 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-491550.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jul 15, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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Updates by the bot instance eessi-bot-vsc-ugent (click for details)

  • received bot command build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx from bedroge

    • expanded format: build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2025.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2025.06-software in job dir /home/eessibot/new-bot/jobs/2025.07/pr_37/491556

date job status comment
Jul 15 11:54:00 UTC 2025 submitted job id 491556 awaits release by job manager
Jul 15 11:54:22 UTC 2025 released job awaits launch by Slurm scheduler
Jul 15 11:55:25 UTC 2025 running job 491556 is running
Jul 15 11:56:26 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-491556.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17525804970.tar.gzsize: 0 MiB (3156 bytes)
entries: 1
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2025.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2025.06/software/linux/aarch64/a64fx
2025.06/init/modules_new/EESSI/2025.06.lua
Jul 15 11:56:26 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-491556.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jul 15, 2025 •
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$ ls -l 2025.06/init/modules_new/EESSI/
total 12
-rw-r--r-- 1 eessibot eessibot 11179 Jul 15 12:54 2025.06.lua

So, by using the same approach as we use elsewhere in the script (by using umask 022 && cat src > dst, see https://github.com/EESSI/software-layer-scripts/blob/main/install_scripts.sh#L58), the problem is solved.

@bedroge bedroge mentioned this pull request Jul 15, 2025
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bedroge commented Jul 15, 2025

Solved this issue in #38, closing this PR.

@bedroge bedroge closed this Jul 15, 2025
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PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer-scripts/2025.07.15

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