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Update run_scanpyQC_rna.py #317

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merged 1 commit into from
Nov 4, 2024
Merged

Update run_scanpyQC_rna.py #317

merged 1 commit into from
Nov 4, 2024

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wlason
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@wlason wlason commented Nov 1, 2024

Changed the default QC from MarkersNeutro to None, so if score_genes in ingest yaml is blank, it will not score genes. It also avoids errors is custom gene QC list is not the default one.

This fixes #316 .

@wlason wlason requested review from bio-la and deevdevil88 November 1, 2024 21:42
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Looks good to me

@bio-la bio-la merged commit 50e734c into main Nov 4, 2024
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Ingest workflow fails if no QC genes to score
3 participants