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Merge pull request #317 from DendrouLab/ingest_QC_score_fix
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Update run_scanpyQC_rna.py
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bio-la authored Nov 4, 2024
2 parents d748a6a + b36d582 commit 50e734c
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion panpipes/python_scripts/run_scanpyQC_rna.py
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@
default="mitochondrial,ribosomal",
help="which list of genes to use to calc proportion of mapped reads over total,per cell?")
parser.add_argument("--score_genes",
default="MarkersNeutro",
default=None,
help="which list of genes to use to scanpy.tl.score_genes per cell?")

args, opt = parser.parse_known_args()
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