set environment vars for all steps

BlueBrain · Jun 3, 2024 · 0fb721f · 0fb721f
1 parent b0e22cc
commit 0fb721f
Showing 1 changed file with 25 additions and 10 deletions.
diff --git a/.github/workflows/simulation_test.yml b/.github/workflows/simulation_test.yml
@@ -189,7 +189,14 @@ jobs:
         export HOC_LIBRARY_PATH=$(pwd)/hoc_full
         export NEURODAMUS_PYTHON=$(pwd)/neurodamus/data
         export CORENEURONLIB=$(pwd)/x86_64/libcorenrnmech.so
+        export NRNMECH_LIB_PATH=$(pwd)/x86_64/libnrnmech.so
         export PATH=$(pwd)/x86_64:$PATH
+
+        echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV;
+        echo "HOC_LIBRARY_PATH=$HOC_LIBRARY_PATH" >> $GITHUB_ENV;
+        echo "CORENEURONLIB=$CORENEURONLIB" >> $GITHUB_ENV;
+        echo "NRNMECH_LIB_PATH=$NRNMECH_LIB_PATH" >> $GITHUB_ENV;
+
         which special
 
         # launch simulation with NEURON
@@ -200,19 +207,27 @@ jobs:
         mpirun -np 2 special -mpi -python $NEURODAMUS_PYTHON/init.py --configFile=simulation_sonata_coreneuron.json
         ls reporting_coreneuron/*.h5
 
-    - name: test-integration
+    - name: test-unit
       run: |
         . ./venv/bin/activate
         pip install -r tests/requirements.txt
-        export PYTHONPATH=$(pwd)/nrn/build/lib/python:$PYTHONPATH
-        export HOC_LIBRARY_PATH=$(pwd)/hoc_full
-        export NEURODAMUS_PYTHON=$(pwd)/neurodamus/data
-        export CORENEURONLIB=$(pwd)/x86_64/libcorenrnmech.so
-        export NRNMECH_LIB_PATH=$(pwd)/x86_64/libnrnmech.so
-        export PATH=$(pwd)/x86_64:$PATH
+        pytest tests/unit
 
+    - name: test-integration
+      run: |
+        . ./venv/bin/activate
         pytest -x --forked tests/integration
 
-    - name: live debug session, comment out
-      if: failure()
-      uses: mxschmitt/action-tmate@v3
+    # - name: test-integration-e2e
+    #   run: |
+    #     . ./venv/bin/activate
+    #     pytest -s -x --forked --durations=5 --durations-min=15 tests/integration-e2e
+
+    # - name: test-scientific
+    #   run: |
+    #     . ./venv/bin/activate
+    #     pytest -s -x --forked --durations=5 --durations-min=15 tests/scientific
+
+    # - name: live debug session, comment out
+    #   if: failure()
+    #   uses: mxschmitt/action-tmate@v3