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Updated assembly template, wkhtmltopdf version requirement and linting#708

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victor5lm wants to merge 5 commits into
BU-ISCIII:developfrom
victor5lm:update_assembly
Open

Updated assembly template, wkhtmltopdf version requirement and linting#708
victor5lm wants to merge 5 commits into
BU-ISCIII:developfrom
victor5lm:update_assembly

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@victor5lm

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PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (black and flake8).
  • If a new tamplate was added make sure:
    • Template's schema is added in templates/services.json.
    • Template's pipeline's documentation in assets/reports/md/template.md is added.
    • Results Documentation in assets/reports/results/template.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).
  • If you know a new user was added to the SFTP, make sure you added it to templates/sftp_user.json

PR description

Closes #688, #706 & #707

@victor5lm victor5lm added this to the v2.3.4 milestone Jul 1, 2026
@victor5lm victor5lm self-assigned this Jul 1, 2026
@victor5lm victor5lm marked this pull request as ready for review July 1, 2026 08:09
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Update assembly template regarding MultiQC Update wkhtmltopdf version Fix linting checks after a PR is approved

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