[2026-06-26 15:18:24,091] buisciii.bioinfo_doc [ERROR ] Unable to convert to PDF. Error:
wkhtmltopdf exited with non-zero code -11. error:
Unknown Error
[2026-06-26 15:18:24,091] root [ERROR ] EXCEPTION FOUND: wkhtmltopdf exited with non-zero code -11. error:
Unknown Error
Traceback (most recent call last):
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/buisciii/__main__.py", line 820, in bioinfo_doc
new_doc.create_documentation()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/buisciii/bioinfo_doc.py", line 1064, in create_documentation
self.generate_documentation_files("service_info")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/buisciii/bioinfo_doc.py", line 631, in generate_documentation_files
self.convert_to_pdf(html_file_name)
~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/buisciii/bioinfo_doc.py", line 577, in convert_to_pdf
pdfkit.from_file(
~~~~~~~~~~~~~~~~^
html_file,
^^^^^^^^^^
...<2 lines>...
options=options,
^^^^^^^^^^^^^^^^
)
^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/pdfkit/api.py", line 51, in from_file
return r.to_pdf(output_path)
~~~~~~~~^^^^^^^^^^^^^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/pdfkit/pdfkit.py", line 201, in to_pdf
self.handle_error(exit_code, stderr)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^
File "/home/vmlopez/micromamba/envs/buisciii-tools/lib/python3.14/site-packages/pdfkit/pdfkit.py", line 158, in handle_error
raise IOError("wkhtmltopdf exited with non-zero code {0}. error:\n{1}".format(exit_code, error_msg))
OSError: wkhtmltopdf exited with non-zero code -11. error:
Unknown Error
wkhtmltopdf has to be updated in the
environment.ymlfile to the wkhtmltopdf 0.12.6.1 version. Otherwise, the bioinfo-doc module fails: