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@BIIFSweden

SciLifeLab BioImage Informatics Facility

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  1. FOM_Multiplexed FOM_Multiplexed Public

    6

  2. steinbock-webinar steinbock-webinar Public

    steinbock: a toolkit for processing multiplexed tissue images

    Jupyter Notebook 5 1

  3. I2K2024-MTIWorkshop I2K2024-MTIWorkshop Public

    Material for the I2K 2024 "Multiplexed tissue imaging: tools and approaches" workshop

    Jupyter Notebook 5 1

  4. MariaUlvmar2020-1 MariaUlvmar2020-1 Public

    HEV Finder: an automated image analysis tool to recognize and characterize changes of the vasculature in biobank lymph node samples from patients with different types of cancer and invasiveness

    Jupyter Notebook 4 2

  5. CoregistrationMultiplexed CoregistrationMultiplexed Public

    Python 3

  6. EduardoVillablanca2023-1 EduardoVillablanca2023-1 Public

    Segmentation of ducts in histology tissue using the NoCodeSeg pipeline

    Jupyter Notebook 3

Repositories

Showing 10 of 44 repositories
  • I2KWorkshop_2026 Public

    Materials for the I2K wokrshop

    BIIFSweden/I2KWorkshop_2026's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 30, 2026
  • BIIFSweden.github.io Public

    Webpage for BIIF's project's list

    BIIFSweden/BIIFSweden.github.io's past year of commit activity
    0 0 0 0 Updated Sep 16, 2026
  • napari-multiplex-thresholder Public

    A napari widget helping to manually threshold multiplex data

    BIIFSweden/napari-multiplex-thresholder's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 26, 2026
  • 7488_multimodal-spatialdata-tissuumaps Public
    BIIFSweden/7488_multimodal-spatialdata-tissuumaps's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 24, 2026
  • 8376_minflux Public

    A desktop GUI for loading, filtering, visualizing, aligning, clustering, and exporting MINFLUX localization data.

    BIIFSweden/8376_minflux's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 6, 2026
  • Webinar_ImageRegistration_Mar2026 Public

    It contains the Jupyter Notebook that was used during the webinar demonstration and the presentation slides

    BIIFSweden/Webinar_ImageRegistration_Mar2026's past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Apr 9, 2026
  • ChristelBergstrom2024-1 Public
    BIIFSweden/ChristelBergstrom2024-1's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 2, 2026
  • DropletHR Public

    Droplet Microfluidics for detection of bacterial heteroresistance

    BIIFSweden/DropletHR's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 20, 2026
  • 6870_isPLA Public

    Spatial Proteomics: In Situ PLA data

    BIIFSweden/6870_isPLA's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 10, 2025
  • 8134_amyloid_formation Public
    BIIFSweden/8134_amyloid_formation's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 16, 2025
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