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Easy Install and MISC Fix#108

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cindytsai merged 126 commits intoyt-project:mainyt-project/libyt:mainfrom cindytsai:EasyInstallcindytsai/libyt:EasyInstallCopy head branch name to clipboardMay 31, 2024

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Commits on Mar 18, 2024

• [pre-commit.ci] pre-commit autoupdate

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

  

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Commits on Apr 4, 2024

• Vendoring all dependencies and build example successfully.

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• Ignore vendor

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• Fix don't install vendor's target.

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• Add comments, and reset redefining install and export.

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• Can link to shared library dependencies install via cmake after installing libyt.

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Commits on Apr 5, 2024

• Move setting rpath to INSTALL_RPATH

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• Add CMakeLIsts.txt for example, and fix the indentation.

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• Add RPATH if DJUPYTER_KERNEL=ON and use vendoring.

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Commits on Apr 6, 2024

• Accept user pass in dependency dir (find_package) or download from scratch.

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• Populate right after checking dependency

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• Reset disable export.

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• Accept user provide library when compiling

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Commits on Apr 8, 2024

• Link based on vendor or provided path to dependency

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• Remove

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Commits on Apr 9, 2024

• Can successfully get user provided path and compile.

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• Get ZeroMQ dependency

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• Add zeromq to rpath if vendoring

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• Don't need to populate, only make sure zeromq exist.

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• libzmq (ZeroMQ) build shared library at libzmq-build/lib

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• Single out fetched version, neglecting "v"

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• Find readline library, and link to it.

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Commits on Apr 10, 2024

• Fix linking to readline.

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• Fix ) for formatting

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• Remove target_link_directories.

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• Do shallow clone.

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• Print fatal error when cannot find readline.

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• Move things related to share folder to share/CMakeLists.txt

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• Add comments to cmake.

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• Rename cmake-build-test.yml to example-test-run.yml

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Commits on Apr 11, 2024

• Ignore vendoring ZeroMQ.

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• Test, build, and install with different option.

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• Require numpy dependency to build libyt.

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• Make readline get link flag through pkg-config

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• Check if it is properly linked when installing

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Commits on Apr 12, 2024

• If get through system readline library under, don't need -l flag.

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Commits on Apr 13, 2024

• Add pkg-config search path if READLINE_PATH is provided.

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• Add comments.

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• fix assign values for link flag.

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Commits on Apr 14, 2024

• Add quick-start.md

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• Update doc/Readme.md

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• Move default value to heading.

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• Separate step-by-step cmake instructions and example

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• Trying to make dependencies more readable.

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• Add pkg-config to prerequisites.

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• Fix anchor.

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Commits on Apr 15, 2024

• Single out dependency to a table.

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• Change heading and format table spaces.

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• Single out python dependency to a table.

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• Rearrange section.

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• Fix typo, and move link to name itself.

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• Add FAQs.

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• Fix python dependency table.

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• Rearrange section and add quick install.

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• Add Quick install.

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• Fix Quick Start Section.

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Commits on Apr 16, 2024

• Move libyt/example to libyt/example/amr-example, and create example/quick-start

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• Update checkout 3 to 4.

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• update doc.

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• Add quick-start demo.

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• Remove linking through libyt/lib

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• Also copy inline_script.py to build folder.

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Commits on Apr 17, 2024

• Change left-bar display content order and update quick-start.

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• Update link and change quick install to install.

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Commits on Apr 18, 2024

• Print flag_reload_file name.

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• Make quick-start use all entry points api with different flag file name.

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• Update quick-start doc.

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• Update quick-start.md

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• Update quick-start demo. Make sure the prompt will be activated.

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Commits on Apr 19, 2024

• Elaborate how-to-install.md

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• Fix

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• Revisit example doc

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• Add unit for reciprocal of density field.

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• Add result figure.

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• Update comments in amr-example python script.

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• Add results figure.

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• Make example calls every Python entry point.

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Commits on Apr 22, 2024

• update what user-not-done-yet error message to get.

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• Drop everything after first number occurred.

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Commits on Apr 23, 2024

• Make it as "not-done-yet" is no two newline as ending.

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• Check backslash and colon.

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Commits on Apr 25, 2024

• Update todos and comments.

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• Follow last commit.

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• Find last line ends with \ and # doesn't exist

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Commits on Apr 26, 2024

• Found ':' in last line.

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Commits on Apr 29, 2024

• change array to vector.

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Commits on Apr 30, 2024

• Separate error msg from bracket and compound keyword.

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• Update logic for checking not-yet-done error.

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• Generate error msg for Py 3.12.

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• Don't use PyErr_ExceptionMatches

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Commits on May 1, 2024

• Fix identifying user not-done-yet error in Python 3.12

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• Merge branch 'Fix-NotDoneYetIdentifier' into EasyInstall

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• Explicitly use macos-14 image, since macos-latest has problem getting python < 3.11

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• Python < 3.11 don't work for macos-latest and macos-14 in github action.

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• Update quick-start.md

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• Update doc.

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• Forgot to remove debug msg.

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• Add docs about OMPI_MCA_osc=sm,pt2pt mpirun

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• Change job name to example-test-run

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Commits on May 2, 2024

• Copy and create yt_getGridInfo_ParticleField without printing error msg.

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• fix header.

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• Merge branch 'Fix' into EasyInstall

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• Merge remote-tracking branch 'yt-project/main' into EasyInstall

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• Get yt_libyt from PyPI.

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Commits on May 7, 2024

• Add horizontal lines in quick start and example.

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• Try setup python v5

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• Try macOS-latest.

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• Create FAQs page to collect all the FAQs.

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• Separate how to install page to how to install and details.

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• Refactor after moving how-to-install to a folder.

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• Fix the anchor after splitting details and how-to-install.

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• Rename install section to libyt and add admontion

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• cont. last commit.

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• Single out required versions to a column.

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Commits on May 8, 2024

• Move FAQs to a single page and them link them.

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• Update python dependency notes and admonition.

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Commits on May 9, 2024

• Add minimum required version of Python.

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• Note --enable-shared if compile Python from source, and add FAQs.

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• Add pip.

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Commits on May 10, 2024

• format requirements and remove label meanings at home page.

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• Update content.

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• use runner image macos-12, it supports python3.7~3.12.

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Commits on May 19, 2024

• set velocity_unit in yt_param_yt.

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Commits on May 30, 2024

• Remove uint, ulong typedef.

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Commits on May 31, 2024

• typo

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