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Add hyperlog to _parse_wsp_transforms #242

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Add hyperlog to _parse_wsp_transforms #242

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19 changes: 19 additions & 0 deletions src/flowkit/_utils/wsp_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -207,6 +207,25 @@ def _parse_wsp_transforms(transforms_el, transform_ns, data_type_ns):
param_m=float(param_m),
param_a=float(param_a)
)
elif xform_type == 'hyperlog':
# biex transform has 5 parameters, but only 2 are really used
# these are attributes of the 'biex' element
param_t = find_attribute_value(xform_el, transform_ns, 'T')
param_a = find_attribute_value(xform_el, transform_ns, 'A')
param_m = find_attribute_value(xform_el, transform_ns, 'M')
param_w = find_attribute_value(xform_el, transform_ns, 'W')

param_length = find_attribute_value(xform_el, transform_ns, 'length')

if param_length != '256':
raise ValueError("hyperlog 'length' parameter value of %s is not supported." % param_length)

xforms_lut[param_name] = _transforms.HyperlogTransform(
param_t=float(param_t),
param_w=float(param_w),
param_m=float(param_m),
param_a=float(param_a)
)
else:
error_msg = "FlowJo transform type '%s' is undocumented and not supported in FlowKit. " % xform_type
error_msg += "Please edit the workspace in FlowJo and save all channel transformations as either " \
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