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#510 PR version
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pavelToman committed Feb 17, 2025
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28 changes: 28 additions & 0 deletions 510_ichorCNA/ichorcna.eb
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easyblock = 'RPackage'

name = 'ichorCNA'
local_commit = '5bfc03e'
version = '0.3.2-20191219'
github_account = 'broadinstitute'

homepage = 'https://github.com/broadinstitute/ichorCNA/wiki'
description = """ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ultra-low-pass whole
genome sequencing"""

source_urls = [GITHUB_SOURCE]
sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}]
checksums = ['38dbee4f4127fc27c4bd51fe3d99cb9eebea6fa9a15463127384923c217f1d74']

toolchain = {'name': 'foss', 'version': '2023a'}

dependencies = [
('R', '4.3.2'),
('R-bundle-Bioconductor', '3.18', '-R-%(rver)s'),
]

sanity_check_paths = {
'files': [],
'dirs': ['%(name)s'],
}

moduleclass = 'bio'

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